RNA id: TCONS_00059652


Basic Information

Item Value
RNA id TCONS_00059652
length 1945
RNA type mRNA
GC content 0.52
exon number 13
gene id XLOC_030556
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 61657010 ~ 61724082 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTCCGGGTGCGCTCCATCTTCCAGCGCCGACCGAGCTGTGCCAACAACCGCATCTTCCATCTCCTCGTTGGGAAGTGCTGCAATAACCACACATCTGTACATCCCGCGTCGATTCTTACATCGCTTGTCCATTTGAGAAGCTGTCAGAATGACTGACTCAAAGTATTTCACCACCAACAAAAAAGGAGAAATCTTTGAGCTGAAGGCCGAGCTGAATAATGAGAAGAAGGAGAAGAGGAAAGAGGCAGTGAAGAAAGTCATCGCCGCCATGACGGTGGGCAAGGATGTCAGTTCGTTGTTTCCAGATGTGGTGAACTGCATGCAGACGGACAACCTGGAGCTGAAGAAGCTGGTTTACCTGTACCTTATGAATTATGCCAAGAGTCAGCCGGACATGGCCATCATGGCAGTTAACAGCTTTGTCAAGGACTGTGAGGATCCAAACCCTCTGATCCGTGCTCTGGCTGTGCGCACGATGGGTTGTATCCGCGTGGACAAGATCACTGAGTACCTCTGTGAACCTCTGCGAAAGTGTCTGAAGGATGAAGACCCGTACGTGAGGAAGACTGCAGCCGTGTGTGTGGCCAAACTGCATGACATCAATGCTCAGATGGTGGAGGACCAGGGCTTCCTGGACTCTCTCCGGGACCTGATCGCTGACTCCAATCCCATGGTTGTGGCCAATGCAGTTGCTGCTCTGTCTGAGATCAGCGAGTCTCACCCCAACAGCAACCTTCTGGACCTGAACCCTCAGAACATCAACAAGCTTCTGACGGCTCTTAATGAGTGCACTGAATGGGGCCAGATCTTCATCCTGGACTGCCTCTCCAACTACAACCCCAAAGACGAGCGGGAGGCCCAGAGTATCTGTGAGCGGGTGACGCCACGTCTCTCGCATGCTAATTCAGCTGTGGTGCTTTCGGCGGTAAAGGTACTGATGAAGTTTTTGGAGCTCCTGCCCAAAGACTCTGATTACTACAACACTCTTCTGAAGAAGCTCTCTCCTCCCCTCGTCACACTGTTATCTGGCGAACCAGAGGTCCAATATGTGGCGCTCAGGAATATCAACCTTATTGTGCAGAAACGGCCTGAGATTTTGAAGCAAGAGATTAAAGTGTTCTTTGTCAAGTACAATGACCCTATATATGTCAAGTTGGAGAAACTGGACATCATGATCCGACTAGCCTCTCATGCCAACATCGCCCAGGTCCTGGCTGAGCTGAAGGAATATGCCACTGAGGTGGATGTAGACTTTGTTCGGAAAGCCGTGCGAGCCATTGGTCGCTGTGCCATCAAAGTGGAGCAATCCGCTGAGCGCTGTGTTAGCACCCTGCTGGACCTTATCCAGACCAAAGTCAACTACGTCGTGCAGGAAGCCATTGTGGTCATCAGGGACATCTTCCGCAAATATCCCAACAAGTATGAGAGCATAATCGCCACTCTGTGTGAAAACCTGGACTCTCTGGATGAACCTGACGCTCGAGGAGCCATGATCTGGATTGTTGGCGAATATGCAGAGCGTATCGACAACGCTGATGAGCTACTGGAGAGTTTCCTCGAGGGCTTCCATGATGAAAGCACTCAGGTCCAGTTGACTCTGCTGACAGCCATAGTGAAGCTGTTCCTGAAGAAGCCCTCTGAGACTCAGGAGCTGGTTCAGCAGGTGCTCAGTCTGGCCACTCAGGACTCTGATAACCCTGACCTGCGTGACCGCGGCTACATCTACTGGCGTCTGCTGTCCACTGATCCTGTCACCGCTAAAGAGGTGGTGCTGTCTGAGAAACCTCTGATCTCAGAGGAGACGGACCTGATTGAGCCCACCCTGCTGGACGAGCTCATCTGCCACATTGGCTCGCTGGCCTCAGTCTACCACAAGCCCCCAAATGCCTTTGTGGAGGGAAGCCATGGCATTCATCGCAAACATCTGCCCATCCAGCACGGCAG

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0030117 membrane coat cellular_component
GO:0030131 clathrin adaptor complex cellular_component
GO:0016020 membrane cellular_component
GO:0030276 clathrin binding molecular_function

KEGG:

id description
ko04144 Endocytosis
ko04961 Endocrine and other factor-regulated calcium reabsorption
ko04721 Synaptic vesicle cycle
ko05016 Huntington disease
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-030131-6564 Predicted to enable clathrin binding activity. Predicted to be involved in vesicle-mediated transport. Predicted to act upstream of or within intracellular protein transport. Predicted to be located in membrane. Predicted to be part of clathrin adaptor complex. Orthologous to human AP2B1 (adaptor related protein complex 2 subunit beta 1).

Ensembl:

ensembl_id ENSDART00000134387

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061831 lncRNA upstream 26129 61601806 ~ 61631573 (+) True XLOC_030555
TCONS_00061830 lncRNA upstream 56465 61588608 ~ 61601237 (+) True XLOC_030554
TCONS_00061828 lncRNA upstream 76429 61579446 ~ 61581273 (+) True XLOC_030552
TCONS_00061829 lncRNA upstream 76934 61579953 ~ 61580768 (+) False XLOC_030553
TCONS_00059639 lncRNA upstream 303309 61353681 ~ 61354393 (+) False XLOC_030545
TCONS_00059666 lncRNA downstream 315877 61998672 ~ 62004794 (+) True XLOC_030564
TCONS_00059678 lncRNA downstream 960129 62642924 ~ 62645411 (+) False XLOC_030572
TCONS_00061832 lncRNA downstream 960129 62642924 ~ 62707839 (+) False XLOC_030572
TCONS_00061477 lncRNA downstream 960411 62643206 ~ 62710728 (+) True XLOC_030573
TCONS_00059679 lncRNA downstream 1016953 62699748 ~ 62704404 (+) True XLOC_030574
TCONS_00059649 mRNA upstream 86255 61556172 ~ 61571447 (+) True XLOC_030551
TCONS_00059648 mRNA upstream 103692 61508418 ~ 61554010 (+) True XLOC_030550
TCONS_00059647 mRNA upstream 152828 61476014 ~ 61504874 (+) True XLOC_030549
TCONS_00059646 mRNA upstream 153177 61475451 ~ 61504525 (+) False XLOC_030549
TCONS_00059644 mRNA upstream 184936 61467625 ~ 61472766 (+) True XLOC_030548
TCONS_00059655 mRNA downstream 55481 61738276 ~ 61755045 (+) True XLOC_030557
TCONS_00059656 mRNA downstream 116834 61799629 ~ 61820009 (+) True XLOC_030558
TCONS_00059657 mRNA downstream 156912 61839707 ~ 61858669 (+) False XLOC_030559
TCONS_00059658 mRNA downstream 160957 61843752 ~ 61858501 (+) True XLOC_030559
TCONS_00059659 mRNA downstream 179404 61862199 ~ 61890569 (+) False XLOC_030560
TCONS_00059650 other upstream 77005 61580599 ~ 61580697 (+) True XLOC_030553
TCONS_00059645 other upstream 170107 61475346 ~ 61487595 (+) False XLOC_030549
TCONS_00059640 other upstream 303785 61353794 ~ 61353917 (+) True XLOC_030545
TCONS_00059638 other upstream 305237 61352331 ~ 61352465 (+) False XLOC_030545
TCONS_00059637 other upstream 305707 61351920 ~ 61351995 (+) False XLOC_030545
TCONS_00059672 other downstream 403022 62085817 ~ 62085934 (+) True XLOC_030567
TCONS_00059683 other downstream 1204333 62887128 ~ 62887243 (+) True XLOC_030577
TCONS_00059685 other downstream 1515160 63197955 ~ 63206468 (+) True XLOC_030580
TCONS_00059703 other downstream 2012010 63694805 ~ 63720707 (+) True XLOC_030587
TCONS_00059708 other downstream 2109552 63792347 ~ 63802705 (+) False XLOC_030590

Expression Profile

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