RNA id: TCONS_00064230


Basic Information

Item Value
RNA id TCONS_00064230
length 1825
RNA type mRNA
GC content 0.44
exon number 6
gene id XLOC_033049
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 40439858 ~ 40449399 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTCGAATGCTGCTCATTCAGTGAAAAGAATAATCCATCTCTTATTGCAGCTAAGGATGATGGTCCTCCTCCACTGGAGTTTATAGATACAGAAGATGATGAGACGGAAATAAAGCTAATGAAGGACACCAGGAGTGTGATCCTGAAACGTCCTGAGTCGCCTGATTGGTCCGATTTTGAGGATTCAGGACAGGTTGAAGTGTTCTCACAGGACGAGTCTTTCAAGCCAAAGAGGCAGCAAAAAAACCTTAAAGCAGACTGTGCAGTTGTGGACTTCACCAACACTCCTCCACTAGCGGAATACAATCCTTACACCACTTCAACGCCTGCAGCATTCTCTACAGAAGCTCAAGGCTCTGAGCAACACCCTCAGGAAACATCCTCGGACCTTTCATCCACCAAAAAATATTTACGCTCTAGGTCAATTAGGCGGTCCCTCAAATTACACCCTTCATCAGTAGATCTGATTCCTGAGCTCCAAACTAGCATTTGTGCACCCTCATCACCTGGTAGCTGGGGTTATTTTCCTTATTTGAACCGCAGAACTTCTGAATCAAATGCTTACACATCTTCACAGATGCTTCACATTGCAGACAGTGTTACCCGCAGGATTTCGGCTGGATCAGAGCCTCTTTGGCTGCCAGACTTAAGTTACATCAAAGCAGATTCTGCTGGATTTATTGACACACACTGTCACCTTGACATGCTCTATGGGAAGTTGGGTTTCAAAGGAAGTTTCCAAAGGTTTCAGAGCATGTATGCAAGTACTTTCCCAGTGGAGTTTAATGGCTGCATTGCAGACTTCTGCAACCCAAGAATCACACAGAGAGAAGCAATCTGGGAAGGATTGCTGGGAGAGGAGAAAGTGTGGGGGGCTTTTGGTTGCCACCCGCATTTTGCTAAGGAGTATAACCAAAATCATGAGCAAAGCATCATGTCTGCTATGCGCCACCCTAAAGCCATTGCGTTTGGAGAGATCGGTTTGGATTACTCACATAAGAACTCAACAGACTCCAGGAAACAGAAAGAGGTGTTTGAACGGCAGCTGCAGTTGGGTGTCGCTCTCAGGAAACCTCTAGTCATACATTGCCGTGATGCTGATGACGATGTGCTGACAATTATGAAGAAGTGTGTTCCCCGAGATTACAAAATACACAGACACTGCTTCACCAACAGCTATTCAGTGATTGAGCCCTTCCTAAAAGAATTCACTAACCTGTGTGTGGGTTTTACTGGACTGGTGACGTACCATCGCGCGACAGAGGCTCGAGACGCTGTGAGGAAAATCCCCCTCAACAGAATCCTGCTGGAGACAGATGCTCCATATTTCCTACCCAGACAGgtGCCCAAGTCTATATGCCGGTTTGCTCATCCTGGTATGGGAATCCACACACTGCGTGAGATCAGTCTGCTGAAGGGAGAGCTCCTGCCCACAGTACTACAAACTATCCGACAAAACACTTCACATATATATGGACTGTGACTGAAAACCCTAAGTTACTATAGGCATTTCACATCTGGTGAGaacaatttattttaagatttcttccaacagttttgttttaaaatggttCTCTGGTTTCTTTTGTTAAATGTCTGCATGCATGCTTACAAGCTGTGTTTGCTTGAGACATAAGTGACATAAAATGGCAGCTTGTGTCTTCCTTTGTGTTGGAAACAAAGTTGTTTTTCTCTGTATCATCACATGAAAGTTTgtgtaaaactaaaatgtaaagcATGTGAGAAATTGACAATTAGCTTTTACCAAGGTGTTGTTTTTATATGAATGGAACTTTTGTAATAATAAATGGTCTTGTATACGCAA

Function

GO:

id name namespace
GO:0016788 hydrolase activity, acting on ester bonds molecular_function
GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081022-51 Predicted to enable endodeoxyribonuclease activity, producing 5'-phosphomonoesters. Orthologous to human TATDN2 (TatD DNase domain containing 2).

Ensembl:

ensembl_id ENSDART00000153466

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064226 lncRNA downstream 4940 40432360 ~ 40434982 (-) False XLOC_033048
TCONS_00064227 lncRNA downstream 5005 40432433 ~ 40434917 (-) True XLOC_033048
TCONS_00065207 lncRNA downstream 30797 40383424 ~ 40409125 (-) True XLOC_033046
TCONS_00065206 lncRNA downstream 30883 40383424 ~ 40409039 (-) False XLOC_033046
TCONS_00064222 lncRNA downstream 30927 40383424 ~ 40408995 (-) False XLOC_033046
TCONS_00065208 lncRNA upstream 30894 40477430 ~ 40482198 (-) True XLOC_033052
TCONS_00064236 lncRNA upstream 126139 40572675 ~ 40573232 (-) False XLOC_033053
TCONS_00065209 lncRNA upstream 179095 40625631 ~ 40629122 (-) False XLOC_033056
TCONS_00065210 lncRNA upstream 179095 40625631 ~ 40629161 (-) True XLOC_033056
TCONS_00065211 lncRNA upstream 207496 40654032 ~ 40659100 (-) False XLOC_033057
TCONS_00064225 mRNA downstream 4897 40429773 ~ 40435025 (-) False XLOC_033048
TCONS_00064224 mRNA downstream 10508 40425066 ~ 40429414 (-) True XLOC_033047
TCONS_00064223 mRNA downstream 10511 40422224 ~ 40429411 (-) False XLOC_033047
TCONS_00064221 mRNA downstream 87707 40329308 ~ 40352215 (-) True XLOC_033045
TCONS_00064220 mRNA downstream 153289 40185796 ~ 40286633 (-) True XLOC_033044
TCONS_00064232 mRNA upstream 4734 40451270 ~ 40455109 (-) True XLOC_033050
TCONS_00064233 mRNA upstream 10262 40456798 ~ 40466861 (-) True XLOC_033051
TCONS_00064234 mRNA upstream 126009 40572545 ~ 40573240 (-) False XLOC_033053
TCONS_00064237 mRNA upstream 126372 40572908 ~ 40573221 (-) True XLOC_033053
TCONS_00064238 mRNA upstream 131683 40578219 ~ 40583253 (-) False XLOC_033054
TCONS_00064217 other downstream 257402 40174216 ~ 40182520 (-) True XLOC_033043
TCONS_00064216 other downstream 277180 40093237 ~ 40162742 (-) False XLOC_033042
TCONS_00064176 other downstream 914417 39524924 ~ 39525505 (-) True XLOC_033025
TCONS_00064162 other downstream 1221332 39213261 ~ 39218590 (-) False XLOC_033019
TCONS_00064151 other downstream 1371430 39064825 ~ 39068492 (-) False XLOC_033015
TCONS_00064235 other upstream 126010 40572546 ~ 40573270 (-) False XLOC_033053
TCONS_00064240 other upstream 178768 40625304 ~ 40625420 (-) True XLOC_033055
TCONS_00064243 other upstream 206593 40653129 ~ 40653238 (-) True XLOC_033058
TCONS_00064244 other upstream 208193 40654729 ~ 40657672 (-) True XLOC_033057
TCONS_00064245 other upstream 209467 40656003 ~ 40656085 (-) True XLOC_033059

Expression Profile

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