RNA id: TU3302


Basic Information

Item Value
RNA id TU3302
length 230
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G2361
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 7085736 ~ 7086259 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agtaactaaagtaactagtaactaaagctggaacagatgaatgtagtggagtaactaaagtaactagtaactaaagctgtaacagatgaatgtagtggagtaactaaagtaactagtaactaaagctgtaacagatgaatgtagcggagtaactaaagtaactagtaactaaagctggaacaggtgaatgtagtggagtaactaaagtaactagtaactaaagctggaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3293 lncRNA upstream 30174 7055267 ~ 7055807 (+) False G2355
TU3294 lncRNA upstream 30174 7055267 ~ 7055807 (+) True G2355
XR_005639730.1 lncRNA upstream 56859 7026754 ~ 7029122 (+) True LOC120562278
TU3268 lncRNA upstream 127651 6957681 ~ 6958330 (+) False G2335
TU3267 lncRNA upstream 127829 6957681 ~ 6958152 (+) True G2335
TU3320 lncRNA downstream 61015 7147274 ~ 7148484 (+) False G2374
TU3327 lncRNA downstream 61015 7147274 ~ 7148484 (+) True G2374
TU3334 lncRNA downstream 61015 7147274 ~ 7148484 (+) False G2374
TU3351 lncRNA downstream 155562 7241821 ~ 7243472 (+) True G2386
TU3352 lncRNA downstream 155562 7241821 ~ 7243472 (+) False G2386
XM_039810088.1 mRNA upstream 322184 6727928 ~ 6763797 (+) False LOC120564849
XM_039810078.1 mRNA upstream 322184 6729858 ~ 6763797 (+) True LOC120564849
XM_039810077.1 mRNA upstream 363023 6695584 ~ 6722958 (+) True LOC120564833
XM_039815363.1 mRNA upstream 426662 6591436 ~ 6659319 (+) True LOC120568096
XM_039810365.1 mRNA upstream 557033 6510225 ~ 6528948 (+) True LOC120565047
XM_039810376.1 mRNA downstream 151812 7238071 ~ 7239593 (+) True LOC120565053
XM_039815515.1 mRNA downstream 303840 7390099 ~ 7437258 (+) True LOC120568176
XM_039819062.1 mRNA downstream 526664 7612923 ~ 7640109 (+) True pus10
XM_039819288.1 mRNA downstream 607326 7693585 ~ 7703831 (+) True LOC120570741
XM_039807381.1 mRNA downstream 632697 7718956 ~ 7743994 (+) True LOC120563246
XR_005640954.1 other upstream 283862 6802005 ~ 6802119 (+) True LOC120569727
XR_005640974.1 other upstream 284465 6801402 ~ 6801516 (+) True LOC120569789
XR_005640981.1 other upstream 286293 6799575 ~ 6799688 (+) True LOC120569812
XR_005640972.1 other upstream 287377 6798490 ~ 6798604 (+) True LOC120569778
XR_005640968.1 other upstream 288401 6797466 ~ 6797580 (+) True LOC120569765
unassigned_transcript_12 other downstream 80337 7166596 ~ 7166667 (+) True trnae-uuc_10
unassigned_transcript_13 other downstream 80843 7167102 ~ 7167173 (+) True trnae-uuc_11
unassigned_transcript_14 other downstream 81361 7167620 ~ 7167691 (+) True trnae-uuc_12
unassigned_transcript_15 other downstream 81873 7168132 ~ 7168203 (+) True trnae-uuc_13
unassigned_transcript_16 other downstream 84126 7170385 ~ 7170456 (+) True trnae-uuc_14