RNA id: TU5299


Basic Information

Item Value
RNA id TU5299
length 5016
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G3858
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 12602290 ~ 12607359 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttttttttttttcttgtctttgctcaatccaaaaaaagaaaattccccATTCATGTTTTATTCCTGGCTcaagatgttttcttttttttaagtgtttttctgTCTACTTTTTCTGCTCCACATGCAAATTGTCTGCTCGCTGTGATGAGTCAAATCAATGAAAAgcacttacaaaaaaaaaaggcgatGTGTTGGTTAATGGTTTTCGCCGCGTGCGTGTGTCATTATTCTCATGTCTGCAATGAGAGGCTTCACGTTTTGCAATTATCTCCCGTCATCCTCCCTCTGCTCTCCCTCACCTCTTATCCTGTTGGTTTGCTATCTTGGTTGATGACTTCAGGCTGTTAGGGATCTCAGAAATTCATCAACAGCATCGTTGCCATGACGGGTAACGGGGCAACAGGCTGAGTGAAGTAACCCTGGCTTGCCTTACAGAAGGCCAGACACCCTTATCTGGCATGAGtcactctgtctcacacacacacacacacaccataaaaaAAGTGCATAGCACGCATAGAGATATGCAAACACAAACTACACTCCCACATGACATGCACACTGTTCACCAGATGTGCAGCCCGATTGCAGCAGGCTGCGAGTTGGGAGTTAACTCTGGTTAAATGCCTCTTGGCAGAgcttaaacacaaacacactccccaGCCCCTGATGGGATTGAACACACACCCCCGTGGTCCCATTTCTGAGATGACGTTTagctatagttttttttttttttttttttgcacctgGCAGCATGTAATTCAAAATATGATTAAACTAATTTTTTTCTATAAACAGACATGTTGGTGGAGGTTTGAGGATTTGAAGTTGGAGGACGTTTAGGCATGTTTTGTTTGGTTGTACGTCAAATTAGACACAGTGGTCAGTTTCATGCCAACTGCTGACACCAGCATTCATTTATCATATGAATGCTTATACGAATGGTTATATTTCTGCTAGAAAAGCTCatgaagtacattttaaaacattaattcaGGAGtggatgtatttaaaaaaaaaatttaaataaaaactactTCACAAActgaattattttaaaatggtcTGAATTGATAATTTAACGTGGCTAAAATACACAACAGCTACTCTGTTCAGTCCAGAACTCAAAGTTACACACCTCCCTTTAAAATGCGTCATCCGTATTCATTTTGTTCCATCGATCACTGTCCAGCATTACCTTTTCAAAAGGCCAAAAAAAGCTTCACATCCAGCATTTGTTGTCGTCTCCTATGTCGTATCATGTGAAATCCTATTTAAAGCTCGTTTCCCTGCTGCCCCTGTGGGGTTGGATGTGAGTTTGGCTCTCGACACCAACACCAAACCCCTAACAGCTGCCGCCGCAGACCACGCCGCCATCGAGGGAGCAGCGCAGACCCAACGCAACTGTCAGCGGCCCGTTGGCTAATCTGCCTTTCCCCCCTATGACCTCACAGACGGGAAGAGCCAGCATGGTGACCGGGTGATAGACGGATATTCTCACACTAGTTGTGCAAAAGCTCAGCGTTGTTACTTATTCTGTCATTGCAGCTTTTTGTCACACATTTTGGGGTTTTAGCTGATGACGCTGTGCAAAATGGACTCAACAATAAGTGAGGAGGTTGTGGTTTAGCGTCTCACGCAGGACACTTTAAGCGAGGTGAAAAAAAGCGCATTCTGCATTCAGATGGTATGTGTCAAATTCTTGTCTGCAGGTGAAATTAAAGCTATGATATCAAACTTTTTCCTtcagggttttattttttttttttctatattcaCCTCCTCAGCAACTTTAAGTCAAGTTTCCTTCTGAAAACTTTTTACTGTATTTCTCTTGAGGCATTGCTCACTTTAGAACAGCGTCTTGCCTGAAGCTGAGGTAAACAATAACTGGAAAGCCCAGAAAGGCGTTGAAGAAGCAGATGGTGGATGCAATTAAAAGAAAAGtctatgcattttttttattaatactaGTCTGTCTGCAACACGCTGAGCTTCCTTCTTATCTGTTCCCTAGCATTGTTAATTGTTGTGCTAGGATTACCGTGTAACCCAGGCCCCCGCTGGCCTCAACCAACACACAACACCCACAGACAAAAGTATGCTCGCCAAATTGTCCACAACATCTCCAACTAGCCACACTGACAGCAGTCTATGGCAAGGAGAAGGCAAGAGGCACAGCATCACCATAGTAACGGCTgccctgtcctgtcctgtcctgtagagACAGGGGCAGATAAATGAGATAAATATATCCCTATCATTAAAAAGAGACATTCTTGTTAGGATTAAGAAGGAAATAGATACACACCCGAAATGGAGTGAgagagccagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatttgtgttcgtgtgtatgtatgtgtgtgtatctgtgtgtgcgtatgtgtgtatattgtatgtgtgtgtgtgtttgtgtgtgtgtatttgtgtgtgtatgtatttgtgtgtgtatatgtgtgtgtgtgtatttatgtgtatattgtatgtatgtgtgtgtgtatattgtatgtatgtgtgtgtgtatgtatatgtttgtgtatgtatgtgtgtgtgtatatgtgtgtgtgtatttgtgtgtatattgtatgtatgtgtttgtgtgtgtatgtgtgtgtgtgtgtgtgtgtttgttccatTGGTGAGGGAAAGTTAGAGGGAGAGCTGAAGATTTCAATGTTTTGACAGAGAGGGGTATGtgtagagaaaaagaagaataacTGAATTGAGGAGAGAAAAACATattcctgtgtttgtgtgtgtatgtatatgtatgtgtgtgtatgtatttgtgtgtgtatgtgtatgtgtgtgtgtgtatttgtgtgtgtatatgtgtgtatgtgtgtgtgtgtgtatttgtgtgtatattgtatgtatgtgtgtatgtgtgtatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgttccgtTGGTGAGGGAAAGTTAGAGGGAGAGCTGAAGATTTCAACGTTTTGACAGAGAGGGGTATGtgtagagaaaaagaagaataacTGAATTGAGGAGAGAAAAACATATTCCTTGTAAATGAGGACTAAGAGAAAACCAACACCAAAGAAGGAACAGAGAAAAGCTCGGAAGAGTCAATTTCAGAGAGTGGGCTGAGGAATATTTAACTGAGGAGCCCCACAGTCGGCGCTGACCTCGTTTGAACGCCGGATGTTAACCCACCCACTCATCTTAACAACAGCCAtcccttctcctttttttttcacgTACTTTAGTTTCCAAGGAAACAAAGTCATCTCAGCTGCTAGATAGACAAAAAGACGAAAGTGAAGGGTGATCTTTCCCCATCTGGTCTCGATTGTTCTCATCGGACTAACAACAACGGCGAGTTGCATCTGTCTCGGTCGCCATCGACGGGGCATGATTTATTCAGAGCTGTCTGCAAGCTCTGAGGGAGACACACATTCTGCACACTCGCAACCTGCAACACTTGTGCGACACTGTGGGAAAGGGTGAACGTCGAGAGAGCCTCCTTTTCTATCCTTTTCATCACCGCTTTCTTCCTCCCTCATTACTCTCCTTTCTTTCCTGCCTTCTGTCTCGCTTGTGCTGTTTTCCCATCTTGCTGTCTTTCTTCCCCGTGCCCCCCCTGATgattatttctctctttctgtttcctCTGGCTGATCTTGTATCCCCTTCAAAAGCCCAAACCTTGTAATATAATACAaagacagaccacacacacacacacaaacaaacacacagaccggTCTAAGGTGCATGTGGATGAGTGCGAGCACATGAACGAGCTGAGGCATCTCCATCGAGTCATAACTTTTGATTTGGCAGTGGGTACTCCAGCGGGGGTTTGATGGGATTCAATACTTTTCTACTGAGACCCAAGAATAACGTATCTGTTTCTGGAAGGAGGTCACCAAATATGACAGGAAGACATCCGAAGCGGGAGAGTGAAGTGGGAACATCAGCCGGTCCGTAAACACGGACCGAAAAAGCGAAACAATTCTTCACTTTCGAGTTTCTTGTCTCCACGGGTTCCACGCGCCTGCAAAACATCCCTCGCTTTACTTTGAGGTGGACCCTTTCTTTCAGACGGCAGCCGCGCTGAATCGTCTCGGGTGAAGAAAGAGAAGACAGGGCGGGGGGAAAAAGAGATAGCTTCGCTCCTCCCCCAAAAAGGGAGGAATGAGAAAATGCATGATTTTGTTTATCCAGTGTTTGTAACCTCTCAATGATATCTGGCCGTAAATCCGTGGTGGATGCGATTCAGTGTTCCCTTTTTTGACCCCCCAAAATAATGACTTTAAGAGATTTTGAGTCCCTGCAACATCAGTGCTGCCTGGTGGAGATACATGTCACATCGCTCCAATGAGAAATGTTGTTCATCAACACCATTCTGCCCCCAAAAAACTCAATGCTGAGGCCATATTTGGGTCCTATTAGTTATTTCGCGGATCTTTTCCTCGCTGAACTTCTAGCCCTCACTCAGTCTggtattttttattgtaaggGTTCTCCAGTAGGTAGTGGTACCTTTTATAGTGCTCCAGCATGTACTTGGGGGCGTACATGTGCTCTTTGGGGTCCACAGGGGGGTATTCCTGCACGGAGCCATCAAACCAGCCCCCCGTCCGGATCAGATCGCGGATGTAGTTGAGGTCACGCTTGTCCTCATAGTCACCCCACCGCGGGAAGTCTCCGTTCTGAGCTGACACCAGCTTGAAGTAGATCCCCTCGGGCGTGAAGCACCAGGAGCAGTGCCACCCGGCGAAGTGGAAGGGGCTGCCCACCGACCACTGTACCAGGATGTGGCCCGTGTCGTTCTCGTACTTTCGGAAACCCGGCATGGTGTAGTATTCGCGTCGGCGGAGCTTGATGCCGTCGCCATCATAGACGTCGCGGAGCATCCCCAATGTGCAGCCTGATACTACCTCTAGAGAGCCAAACTGCTTCCAGAAAAAACCATACAGGGACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639064.1 lncRNA downstream 87184 12513407 ~ 12515106 (-) True LOC120558164
XR_005639063.1 lncRNA downstream 87185 12513407 ~ 12515105 (-) False LOC120558164
TU5304 lncRNA downstream 87225 12513407 ~ 12515065 (-) False LOC120558164
TU5283 lncRNA downstream 106196 12466832 ~ 12496094 (-) True G3847
TU5258 lncRNA downstream 164888 12435552 ~ 12437402 (-) True G3828
TU5293 lncRNA upstream 2386 12609745 ~ 12616154 (-) True G3857
TU5366 lncRNA upstream 80482 12687841 ~ 12688294 (-) True G3914
TU5367 lncRNA upstream 81082 12688441 ~ 12688811 (-) True G3915
TU5378 lncRNA upstream 144396 12751755 ~ 12751976 (-) True G3926
TU5384 lncRNA upstream 149116 12756475 ~ 12759089 (-) True G3929
XM_039815557.1 mRNA downstream 148934 12439942 ~ 12453356 (-) False ift27
XM_039815565.1 mRNA downstream 148934 12439942 ~ 12453356 (-) True ift27
XM_039811874.1 mRNA downstream 273654 12320596 ~ 12328636 (-) False LOC120565820
XM_039811865.1 mRNA downstream 273695 12320596 ~ 12328595 (-) True LOC120565820
XM_039813849.1 mRNA downstream 299159 12300865 ~ 12303131 (-) True LOC120567055
XM_039805464.1 mRNA upstream 34654 12642013 ~ 12659983 (-) True c1qtnf6b
XM_039796149.1 mRNA upstream 81569 12688928 ~ 12703781 (-) True LOC120543530
XM_039804120.1 mRNA upstream 96823 12704182 ~ 12720442 (-) False LOC120561143
XM_039804137.1 mRNA upstream 96823 12704182 ~ 12720442 (-) False LOC120561143
XM_039804127.1 mRNA upstream 96823 12704182 ~ 12720442 (-) False LOC120561143
TU4966 other downstream 1609089 10977643 ~ 10993201 (-) False nacc1b
TU4974 other downstream 1697055 10899558 ~ 10905235 (-) True G3586
TU4721 other downstream 2560286 10026270 ~ 10042004 (-) True G3373
TU4646 other downstream 3035062 9549981 ~ 9567228 (-) False LOC120559295
TU4635 other downstream 3052392 9525543 ~ 9549898 (-) False G3312
TU5319 other upstream 34913 12642272 ~ 12659962 (-) False c1qtnf6b
unassigned_transcript_53 other upstream 252925 12860284 ~ 12860355 (-) True trnac-gca
unassigned_transcript_54 other upstream 254335 12861694 ~ 12861765 (-) True trnac-gca_1
unassigned_transcript_55 other upstream 255171 12862530 ~ 12862601 (-) True trnac-gca_2
unassigned_transcript_56 other upstream 258609 12865968 ~ 12866039 (-) True trnac-gca_3

Expression Profile