RNA id: TU5366


Basic Information

Item Value
RNA id TU5366
length 454
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G3914
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 12687841 ~ 12688294 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ccctgtattttaaggaagaacatttatttatttacatacagattatttacatagatacattattcattcacaaagaaaattggtgtccttaaaggttggatttttcctcatttttttaattaaggcattacgatcaatttccaaaagatgattttttattcctctttttagtcaactgtagcataaacttatgagtgccactgtaTTTCGGAACTGATATTCTGAAGTGTTTATCTAGCATTCAGTACAAAGACACTTGCCAATGTTAGTAAGAAAGGTAACAGGGctaaaaaaaagatgatgatTTGACAAAAGCTCTGAGGTGCAATTTGAATTACTTTGTTAATTATTGTGCCATCCCTTGTTTGATAATTTACTCTCTTACAGACAGAATCTTCTATATTTTAACGATATTGAACTTAAATCATTTTCCCCATAATAAAACATCCTTCTG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0050662 obsolete coenzyme binding molecular_function
GO:0048037 obsolete cofactor binding molecular_function

KEGG:

id description
ko00350 Tyrosine metabolism
ko00982 Drug metabolism - cytochrome P450

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5294 lncRNA downstream 71687 12555947 ~ 12616154 (-) False G3857
TU5295 lncRNA downstream 71687 12587365 ~ 12616154 (-) False G3857
TU5293 lncRNA downstream 71687 12609745 ~ 12616154 (-) True G3857
TU5299 lncRNA downstream 80482 12602290 ~ 12607359 (-) True G3858
XR_005639064.1 lncRNA downstream 172735 12513407 ~ 12515106 (-) True LOC120558164
TU5367 lncRNA upstream 147 12688441 ~ 12688811 (-) True G3915
TU5378 lncRNA upstream 63461 12751755 ~ 12751976 (-) True G3926
TU5384 lncRNA upstream 68181 12756475 ~ 12759089 (-) True G3929
TU5382 lncRNA upstream 75153 12763447 ~ 12767103 (-) True LOC120555888
TU5383 lncRNA upstream 75153 12763447 ~ 12767103 (-) False LOC120555888
XM_039805464.1 mRNA downstream 27858 12642013 ~ 12659983 (-) True c1qtnf6b
XM_039815557.1 mRNA downstream 234485 12439942 ~ 12453356 (-) False ift27
XM_039815565.1 mRNA downstream 234485 12439942 ~ 12453356 (-) True ift27
XM_039811874.1 mRNA downstream 359205 12320596 ~ 12328636 (-) False LOC120565820
XM_039811865.1 mRNA downstream 359246 12320596 ~ 12328595 (-) True LOC120565820
XM_039796149.1 mRNA upstream 634 12688928 ~ 12703781 (-) True LOC120543530
XM_039804120.1 mRNA upstream 15888 12704182 ~ 12720442 (-) False LOC120561143
XM_039804137.1 mRNA upstream 15888 12704182 ~ 12720442 (-) False LOC120561143
XM_039804127.1 mRNA upstream 15888 12704182 ~ 12720442 (-) False LOC120561143
XM_039804114.1 mRNA upstream 15888 12704182 ~ 12715137 (-) True LOC120561143
TU5319 other downstream 27879 12642272 ~ 12659962 (-) False c1qtnf6b
TU4966 other downstream 1694640 10977643 ~ 10993201 (-) False nacc1b
TU4974 other downstream 1782606 10899558 ~ 10905235 (-) True G3586
TU4721 other downstream 2645837 10026270 ~ 10042004 (-) True G3373
TU4646 other downstream 3120613 9549981 ~ 9567228 (-) False LOC120559295
unassigned_transcript_53 other upstream 171990 12860284 ~ 12860355 (-) True trnac-gca
unassigned_transcript_54 other upstream 173400 12861694 ~ 12861765 (-) True trnac-gca_1
unassigned_transcript_55 other upstream 174236 12862530 ~ 12862601 (-) True trnac-gca_2
unassigned_transcript_56 other upstream 177674 12865968 ~ 12866039 (-) True trnac-gca_3
XR_005639486.1 other upstream 303373 12991667 ~ 13028393 (-) False LOC120560419

Expression Profile