RNA id: TU5293


Basic Information

Item Value
RNA id TU5293
length 5343
lncRNA type inter_gene
GC content 0.56
exon number 2
gene id G3857
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 12555947 ~ 12616154 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

taaaattttaaaattaatttattatacGTCTTTGTCATAGAACTCATTACTTTTTGTTCATGGTTAACATACAGCCATTCATATAGAGAACAAATGAGTATTTTTTATTCGTCGTTTTCAATTAACTTAGAAATGTACACTCTTCTTTGAGACCCCGCAGAGGACAAAAATATCCTTTTTTCAAAAGTGTCTTTtctcatttatgtttttttttttccccctgtggGAACAGgccctctgcctcctcctcttctgttctctctctctctctcaatttggATGAACGGATGTGGAGGCAAGGGAACACCTGAACACACTGGCACAATGATGAACACAGGCAAAGGGCTGATGTGCACTAACAACACAGccaatctttttttctcttctgcctctctcactcacacacacattcagtaaGCTACAGTGCATACGCACTCTCCCACACAATTACAGAGACCCATCAAACCATTTAAACATaatagcacaaaaaaaaaatgaagctctaacaatgatataaaaaataaactatgcAACCATATACAATCCTTATCAGTGCATGGGgacagagggaggcagggggTACAGGTTGTGTTATTGTACAATGTCACAATATGTAATAAGGTACGCTCATGTGTAGCCGTTgtgtcaaaaataaaaaggtataaAAATCATTTCCTTGCTTTGTCCTCTTCTGACAGCTTTTGCAAACATGTTTGAAATGCTTGGAAAGGAGCGACTGGTTTGTGGTTTTGCAGGCTACATAAGAACATGGCTGTCAGCTAAGGTAGGGATGTTATTGTATGTTACAGTAGGTCATTTCCATTGGTAGACAATGAAGGACCATAATAGCAGGCATAAGCAGTCTACTTATCCCTCCAATTTCATTAAGGTGAactaaaaaaacacagacatagCGTTGCAACCCGCTCGCTTACACTTTGTTTGATTTTATCTAACAAGAACACACCATTTAACCTACTTTTATTATCTCTCTCACATtgtaaactgtattttttttaccacaacAGAGTCTGTGGAAAGAGTGGACGGTTAAATCTGGCAACGTGGCGGGAGGGTGGAGAGGATTAGACGGATATGGAACTGGCGGCCGGCCCTCTTGGTTAATTGGCTGCAGAGAGCACTCTGCCCCGGGGACATGAAACCGGGTGGCAGCAGCATGCCTTGTGCCAATCATCTGCCAAGGCCGTaatgcagtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaaaatatatgtatataagcAACATGGTGTCTTTTGTTAGTTAGTCTTTTGTCCTTTTTCAAGGACAAGATGGACGGAAGGCTGAAGAAGGGCTTGTTTATGTGTGATATGTGAGAGGACAAGCAGGATGCCTCCTAGTGGTCACTGTGTGAGGACCGgccagtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggatgtaggTAGGTAGGCCTATGTGTAACTGTGTGCTGTAGTTATCTGTGTAAAGCCCTTTGTGAAGGATATGGAAATGAGTTATGATAAAACCCtcaaaaaaagaacaacataaaacatattcaaaacaaaaaaagcaactcATCAGTGGTTATGTGATGCTGTTAAGGACACAAGAAAAAGATGATGTCATCAACACAACATAGCAGTTACAGAAAGCAAACAAGATGGCTGCCACAGTGTTAACTCCCCTTTACGGCATCGAAGGAGGTAAAAGATCCGTCAGGTGGAGTGGAAGTCTATTCTAGTAGTAGGCTGAGACAGTGCTTAtgagcttacacacacacacacacacacacacacacacacacacacacacacacacacacacacatttattcacatacacacacgcctTAAAAAGACATTAAATATCAAGCTGCCAAGTGGATgaagttacaaaaaaagtacaaaaacaaagttaaatagaaaaacagagggccaaaaaataaaagatcaCCCCTCCTCTGTTTCTCAGACTTCCACCAAATAACAACATTGAAACAGAAGGAATGACGCATTGATTGAACTCACACAAAAGCAAAAGTgcaaaacaaaaccaaacaaaaaaagggtAGAGACCATATACGTGGGAAGTCTGTGATTGTAAGGATCAGTCACTCCctctttccatctctgtctccctcttctGATTGCGGGGAATTCAAACCCCTCTGGAGGCTCGCTCTCGCACCCTTTCTCCCTCCCCttcatttgactttttttccaacCCCGTCACACTCTCttttctctgcctctgtctcagTTCAGCTCGGGCTGCTAAGGGACGGCGAGTTTCTGAGAATTGCAGGTAGGCTCGAGTTACAAAGTagaccacacacatgcacacagacagcaATAAAACGCACATTACATGGACAAGAGTATGTGGACACCTGGAAATTAAACCCATCTGTGATTGTTAAACATATCATTCCAAAACCATGGGCATTAATCTGCTGCCATAACAGCCTCCACTATTCTGGGAAGGCTTTCAACAAGATCGTGGCAGCGACTTTCAGCGATTTAGGTGTTAGATAGAGTTGAGGTCAGTGCTCTGTGCAGGCTAGTCAACTTCTTTTACGCCAAACTGAGAAAACCATTTCTTTATGGACCTTACTGTGGCCACGGGGGCATTGTCGTGTTCAAACAGGAAAAGACCTATCCCAAACCGCTGCCACAAAGAGTCTAAAATATCACTGTATGCTCTAGAAATTGAAGGCCCTGAAAACATATGCTTGCAATCAACTTCTTATGAGTGATGAGATCTTACATGAACACACTATTTTCTGCCAAAGTTTCCaattatctttttcttttctttaatctGTGCTCCTCCACTGGTTTAAAGTGGGCGGGACTCAATTAcggtagaaaaagaaaaaaagcaccaaTTAGGATTTAGCAACATCTGATTCAGAATCGGATAAAACCACATCCATACCCATAAAAAATTGTTGAGCAAGAGAAGTTTGACgggtcaaaatgtaaaagtttCGGTcgtctttttctacacttttgtcTTTCGTgacttttcccgatgtttttgtcagttttttcccgacgtttttgaagcttttcacAACGTTTCTGATGATTTTTTTCCTGCGATTTCTTTCGAcgtttgtcgtttttttcgcACGTTGTTGAAGcttttcgtcacttttttcaacattattttttttctccaaatgctataaaattgaataaaacacccaaattcaatgaaagttaTTTCACGTTATTTTTGGtttggacaatttggttgaaagaaacccaaatttatgAAAGgaaacttttagaaaatggtgtcaaatttgacccaaggacaacagaaGGGTTTCCTGGCCGGTACCAGTAACCTTCGAAATGTAAGTACCcgtacatgtttttttaaaaactctgattgttgcttatttagtcatatatatatatatatatatacgtaaaTGTAAAGATTTGAAGTTTTCAGGGGCTTCAATATTTCTCACAGTTGGAACGAATGGGCCTAACCTTAAATAACTGCACCAACACTACACAAAATTATTGTCGTTGTTGTCCACATACCTTTGGCCATATAGTgaagtctcacacacacaaggagagaAACACATTCAACACTCATCCCTTCTCTTCAGTGTCTAAAGGCATTTGATCTGCAGCCAGGTGTCGGCCTGTCTGCATGCCCAATGTTTCGCGCACATATGTGTCCATTTCGTCCATTTGTCTCTGCAGCGCCACACTGACTTTTATCTTTTTCATCTGCGGTGTCACAACATATGGAGTCCTGGACCAAACTCATCCAGCACCCACCCTGAAGCCAACAATCTGTCCTAGAACACACTCAGGCACATTATGAGTCCTGACTGACAAACACATAATCACACCTCTCCTATTTTGCTGTTATAAATACCAGACGCATTCATTAGACAAAACGTGACATGTTTACAGGAGTTTCCACCCCCCCATAATGACAAATGATTCCATTATTTCATATGCAACACTGCTTATCAACTGCTGCTGCTTAATGGGATGTGTTTTCTTTCTGAATTGGAGCCCACGTCAAATGTGCGATAGGGCAAATTATTTTCCATACAACTTTTACGTGAGTTGGCTGCTTTACTGAACACAACTGGACCACACCCAATTGATTTAAAAGACCCATATACAAAAGCAAGGTTTTAGTTCACAGTGGAAGGATTTAACATTGTGAggctttctgtttttctcaaaCATTTTTTATGCTGTAAATTGTTAGTTCCCCCAAATGTCCTTACTTCCATCTAGACATGGAGATAGCTTTTGGTTTGATTTGGCCAGATTTGGAGATATTGGGCTTCACTAACGGTACAATGGAAGTATATGTTGTGATTTTCACAACTTTGAAACCAATACAAATTCAACAGCAACATCTCTCTCTAGGAACAGTGTCTCTGTTACTCTGGATAACCCACAGAATATGCGGGCAACAGTTTCAACAGGGACTATACTTTGGTAGAAAGTTCCATGAAAAACTGGAAAGACACTAAATGTAAGTTTTTAATGCTGTTAGCACCATATATCACCTCCATTGTATAAGAGTGGCAACAGAAATCCCCAAAAGTCTGGGCAGCTGAAACCAAACCTGGATACTGTTGCACTAGAGGGATATGTTTTGTGATTTAATTTGAACTGGCCCCTATAATACCATATGTAGGTTTGAGTTCAATACTAACAAATCCAGCCCTGAAGTCTAAGCACAGTAAAGACTTGCACTTGTTTTGTGCAATACTTGTGGTTACTAACACCAAGTACTTTCCAATCAGTGGTGACACATCTGTCGGAGTTAATGGGATCGCTCAGCTTGTGGAATGCGAATGCTTTCCGTCGCTTACATGAAGAGAAGTACAACATGTTTACAGCCAAGACAACAGCGGCAGCAGCTTACTGTTGCTGTAGTATGACGGGATGCGTGTGCTGGTTCCTATTTTGAAAAACCCAATCTTAAAGAACTTCActtcttgatttgatttgaagcTTTGACGTGTTCAGCGTAATTCAGCTGCAATGTTCCATCGATGATTGGTGTACATGAGATGAGGAGTCAGAACTTAGGAAAAAGTAGTCCTTGGTGTACCAAGACAGTGCACATGGCACtcttttggaatttttttttataaaggtaCACATTCCAGACCCATTTAGGAGCaatcagaaagagagaaaaagcaaTAAATGACTTCAACAACAAAGTCAAAAAATGACCCTCTTTTCTCCGCACCCCCACACCGTCCTCCTTGATTTCCAGCCTGCCTGCCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5299 lncRNA downstream 2386 12602290 ~ 12607359 (-) True G3858
XR_005639064.1 lncRNA downstream 94639 12513407 ~ 12515106 (-) True LOC120558164
XR_005639063.1 lncRNA downstream 94640 12513407 ~ 12515105 (-) False LOC120558164
TU5304 lncRNA downstream 94680 12513407 ~ 12515065 (-) False LOC120558164
TU5283 lncRNA downstream 113651 12466832 ~ 12496094 (-) True G3847
TU5366 lncRNA upstream 71687 12687841 ~ 12688294 (-) True G3914
TU5367 lncRNA upstream 72287 12688441 ~ 12688811 (-) True G3915
TU5378 lncRNA upstream 135601 12751755 ~ 12751976 (-) True G3926
TU5384 lncRNA upstream 140321 12756475 ~ 12759089 (-) True G3929
TU5382 lncRNA upstream 147293 12763447 ~ 12767103 (-) True LOC120555888
XM_039815557.1 mRNA downstream 156389 12439942 ~ 12453356 (-) False ift27
XM_039815565.1 mRNA downstream 156389 12439942 ~ 12453356 (-) True ift27
XM_039811874.1 mRNA downstream 281109 12320596 ~ 12328636 (-) False LOC120565820
XM_039811865.1 mRNA downstream 281150 12320596 ~ 12328595 (-) True LOC120565820
XM_039813849.1 mRNA downstream 306614 12300865 ~ 12303131 (-) True LOC120567055
XM_039805464.1 mRNA upstream 25859 12642013 ~ 12659983 (-) True c1qtnf6b
XM_039796149.1 mRNA upstream 72774 12688928 ~ 12703781 (-) True LOC120543530
XM_039804120.1 mRNA upstream 88028 12704182 ~ 12720442 (-) False LOC120561143
XM_039804137.1 mRNA upstream 88028 12704182 ~ 12720442 (-) False LOC120561143
XM_039804127.1 mRNA upstream 88028 12704182 ~ 12720442 (-) False LOC120561143
TU4966 other downstream 1616544 10977643 ~ 10993201 (-) False nacc1b
TU4974 other downstream 1704510 10899558 ~ 10905235 (-) True G3586
TU4721 other downstream 2567741 10026270 ~ 10042004 (-) True G3373
TU4646 other downstream 3042517 9549981 ~ 9567228 (-) False LOC120559295
TU4635 other downstream 3059847 9525543 ~ 9549898 (-) False G3312
TU5319 other upstream 26118 12642272 ~ 12659962 (-) False c1qtnf6b
unassigned_transcript_53 other upstream 244130 12860284 ~ 12860355 (-) True trnac-gca
unassigned_transcript_54 other upstream 245540 12861694 ~ 12861765 (-) True trnac-gca_1
unassigned_transcript_55 other upstream 246376 12862530 ~ 12862601 (-) True trnac-gca_2
unassigned_transcript_56 other upstream 249814 12865968 ~ 12866039 (-) True trnac-gca_3

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU2277509 True 212 lncRNA 0.42 1 NC_048590.1 3785003 ~ 3785214 (-)