RNA id: TU5367


Basic Information

Item Value
RNA id TU5367
length 371
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G3915
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 12688441 ~ 12688811 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttatttcatggatccaggttactatgcatcctgataaagctCCCTTGGCTTTTGTAATTGAAATAGCCCCACATgatcacatacccttcatcatacctaaagattggcatggggtactttccataaatcagctctctatcatctctttatcaggatgcatattacccaggatactatgcatcctgataaagtatTTCAAGTATTTATAAGTATATTTCAagtaaaatagccccacattatcacatacccttcacaatagagattggcatggttttatttcagttagcctaatagatggtttgatttgcattgagagatgattttatggaaagtaccccatgccaatctctaggtatggtgaagggtatttG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process

KEGG:

id description
ko00630 Glyoxylate and dicarboxylate metabolism
ko04610 Complement and coagulation cascades

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5366 lncRNA downstream 147 12687841 ~ 12688294 (-) True G3914
TU5294 lncRNA downstream 72287 12555947 ~ 12616154 (-) False G3857
TU5295 lncRNA downstream 72287 12587365 ~ 12616154 (-) False G3857
TU5293 lncRNA downstream 72287 12609745 ~ 12616154 (-) True G3857
TU5299 lncRNA downstream 81082 12602290 ~ 12607359 (-) True G3858
TU5378 lncRNA upstream 62944 12751755 ~ 12751976 (-) True G3926
TU5384 lncRNA upstream 67664 12756475 ~ 12759089 (-) True G3929
TU5382 lncRNA upstream 74636 12763447 ~ 12767103 (-) True LOC120555888
TU5383 lncRNA upstream 74636 12763447 ~ 12767103 (-) False LOC120555888
XR_005638772.1 lncRNA upstream 75812 12764623 ~ 12766585 (-) False LOC120555888
XM_039805464.1 mRNA downstream 28458 12642013 ~ 12659983 (-) True c1qtnf6b
XM_039815557.1 mRNA downstream 235085 12439942 ~ 12453356 (-) False ift27
XM_039815565.1 mRNA downstream 235085 12439942 ~ 12453356 (-) True ift27
XM_039811874.1 mRNA downstream 359805 12320596 ~ 12328636 (-) False LOC120565820
XM_039796149.1 mRNA upstream 117 12688928 ~ 12703781 (-) True LOC120543530
XM_039804120.1 mRNA upstream 15371 12704182 ~ 12720442 (-) False LOC120561143
XM_039804137.1 mRNA upstream 15371 12704182 ~ 12720442 (-) False LOC120561143
XM_039804127.1 mRNA upstream 15371 12704182 ~ 12720442 (-) False LOC120561143
XM_039804114.1 mRNA upstream 15371 12704182 ~ 12715137 (-) True LOC120561143
TU5319 other downstream 28479 12642272 ~ 12659962 (-) False c1qtnf6b
TU4966 other downstream 1695240 10977643 ~ 10993201 (-) False nacc1b
TU4974 other downstream 1783206 10899558 ~ 10905235 (-) True G3586
TU4721 other downstream 2646437 10026270 ~ 10042004 (-) True G3373
TU4646 other downstream 3121213 9549981 ~ 9567228 (-) False LOC120559295
unassigned_transcript_53 other upstream 171473 12860284 ~ 12860355 (-) True trnac-gca
unassigned_transcript_54 other upstream 172883 12861694 ~ 12861765 (-) True trnac-gca_1
unassigned_transcript_55 other upstream 173719 12862530 ~ 12862601 (-) True trnac-gca_2
unassigned_transcript_56 other upstream 177157 12865968 ~ 12866039 (-) True trnac-gca_3
XR_005639486.1 other upstream 302856 12991667 ~ 13028393 (-) False LOC120560419

Expression Profile