RNA id: TCONS_00066020


Basic Information

Item Value
RNA id TCONS_00066020
length 2007
RNA type mRNA
GC content 0.40
exon number 10
gene id XLOC_033751
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 26709251 ~ 26739674 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCATCAACGCTGGACGAGACGCGCAGCTGACAACTAGTGTACTTTTTCATTTTCCCATACTAAACGACTCTAAACGTCAGCAAAATGGGGAAAGGATGCATAACTGCGACCAAGTACTTCCTGTTTCTCTTCAACTTCATCTTCTTTATCTTCGGAGCCACGATTATGGGATTTGGACTGTGGATCCTCCTagacaatcagagtctcattgcAGTGTTGCAGGAGTCATCCGTGATCCTGAAGGTGGTCTCTTATATTCTGATTGGCGTGGGCTCCTTCTCCATGCTTCTGGGGTTTCTGGGATGTCTGGGAGCCATCTATGAAATCCGCTGCTTGCTTGGATTGTACTTTACCTGTCTATTGCTCATTCTCCTGGCTCAAGTGGCTGTGTCCATTCTCATCTACTTCCAGCGTGATTTGTTGAAGACTGAGGCGGATAAAATTGTGTCTCAAGTTGTGGCAAACTACCCTGGACAGAACAAAACCGCAGAGCAGGCCTGGGACTACCTGCAGAGAACAATGCagtgttgtggctggaatggaCGCATGGACTGGGACGAGAACCATATAATAAAGAACAATACAGTGCCGCTGTACCCATGCTCCTGCCACAATTACTCCATCCAAGCACCAATTGTACCTGATAACGGCTTCTGTCAGGCCTCTTCTAGTGATTGGCCCATCTATCAGACGGGCTGTCTGGAGCATGTGGGGAGCTGGCTCTTCACAAAttatggaattattttgggaatcTGTCTTGGGGTGGCTGTCATTGAGCTGCTTGGAATGATACTTTCTATGGGCCTTTGCAAGAGTGTACACCAAGAGGATTACACCAAAGTACCGAAGTACTGAGAAGGAAACACGGACACTCATACACAAATGTATTCAgtccttttttctttttggaaaaaCAGATCTCCCTCTTTTTTTCTACAGTATACACAGTGtttccaaatgaaaaaaaatgttatgtttaatcaTGAGACTTCACCCGTTGTCAGTAACACTATCCCTGTGATGTCTAATGAGATCTTCTTAGTCCATTTTGAATAGCCCATTGTATGACAGTTTGAAGTATAGCACATGAAGGCTGCCCACATAAATGAATGAAACGTGTATGACGAGACTCGCTGCCCCTGAATGCTTTATTTATACACCAAAACTCATTAACACCCATTCTAGTCTGTTTGCTTTGATCATAGAGGCCCAAACTACGAGTTAACAGCCAATTAAACTTCGGTTTGCTCTTTATAGACAACAGGAAAACCACAAAGGGCCTGCTTTTGTTAAAACAGGATTTTACTTTGATATTTAGCATTTTGTGGTATACATATACTGACACAATTCCCACCCTTCTGTAGTGGCATGTCTCAAATACGAAAGTTGTGTTTTATAGTCTGCCGTTTATGTTTGTACATCAGTGTTGTTTCAGGTTTATCTTTTAttagtgtgtatatattttaggTTTCATTTGCATGTTCATTTGGATAAGTCTTGGGAGACCTTTTTTTTGTACAGATGATAAAttcttatgtcttTTTTCTACATGCGTAAATCGAGCTTATTTGTATGAGCACGTTTGTAAGGAAGTATATGAAGCTATTCCTCGATGATGTGAACCAAAATTAAGAGATTCGCCCCCAAAGTTGACTGCAGActtgatttattttgtattgcgTTGATCCTAATTTAACCGAGTTTCTCCTCTGGCACCACTTTGTCTTTAATTGTATACTTGTTTTTGACAGGTATAATGGAAGAGAAAAAAGAAATGGAACAGTGTTTTCTTTATCATCTGTAACAATTATTTTGCATTTGTAAAACTTTTAGTTTTGTAATATAAGGTACTCACTTATTTTAGTGTTTTGATGTTCCAAAAACAAATCCTATTTTTTTGTAATACTGGGAATACAGTCCCCTACCAAGTAATTATGAAATTATTGAAGTATTGTAACTACATGTACCTTTCTTAAGCCGAATGTGATACAATAAATAACTCACCC

Function

GO:

id name namespace
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2818 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in central nervous system; otic vesicle; pectoral fin; and yolk syncytial layer. Orthologous to human CD82 (CD82 molecule).

Ensembl:

ensembl_id ENSDART00000010323

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00066014 lncRNA upstream 93101 26611727 ~ 26616170 (+) True XLOC_033748
TCONS_00066013 lncRNA upstream 150865 26557767 ~ 26558406 (+) True XLOC_033747
TCONS_00068853 lncRNA upstream 166848 26534014 ~ 26542423 (+) False XLOC_033746
TCONS_00066022 lncRNA downstream 12351 26750471 ~ 26756182 (+) True XLOC_033752
TCONS_00066027 lncRNA downstream 121368 26859488 ~ 26876314 (+) False XLOC_033754
TCONS_00066033 lncRNA downstream 303253 27041373 ~ 27044000 (+) True XLOC_033756
TCONS_00068855 lncRNA downstream 306409 27044529 ~ 27048457 (+) True XLOC_033758
TCONS_00066047 lncRNA downstream 634313 27372433 ~ 27424587 (+) False XLOC_033760
TCONS_00066018 mRNA upstream 4662 26649319 ~ 26704609 (+) True XLOC_033750
TCONS_00066017 mRNA upstream 5754 26649319 ~ 26703517 (+) False XLOC_033750
TCONS_00066015 mRNA upstream 75210 26629084 ~ 26634061 (+) False XLOC_033749
TCONS_00066016 mRNA upstream 76809 26629126 ~ 26632462 (+) True XLOC_033749
TCONS_00066012 mRNA upstream 158098 26549846 ~ 26551173 (+) False XLOC_033747
TCONS_00066023 mRNA downstream 24597 26762717 ~ 26837282 (+) False XLOC_033753
TCONS_00066024 mRNA downstream 24838 26762958 ~ 26836835 (+) False XLOC_033753
TCONS_00066025 mRNA downstream 24870 26762990 ~ 26837182 (+) True XLOC_033753
TCONS_00066026 mRNA downstream 106141 26844261 ~ 26892613 (+) False XLOC_033754
TCONS_00066029 mRNA downstream 260049 26998169 ~ 27021303 (+) False XLOC_033755
TCONS_00065996 other upstream 588535 26120631 ~ 26120736 (+) True XLOC_033735
TCONS_00065993 other upstream 637763 26071426 ~ 26071508 (+) True XLOC_033733
TCONS_00065992 other upstream 638264 26070874 ~ 26071007 (+) True XLOC_033732
TCONS_00065985 other upstream 680498 26028659 ~ 26028773 (+) True XLOC_033727
TCONS_00065983 other upstream 724432 25973649 ~ 25984839 (+) True XLOC_033725
TCONS_00066028 other downstream 150290 26888410 ~ 26892142 (+) True XLOC_033754
TCONS_00066032 other downstream 303244 27041364 ~ 27044003 (+) False XLOC_033756
TCONS_00066034 other downstream 305595 27043715 ~ 27043842 (+) True XLOC_033757
TCONS_00066036 other downstream 321274 27059394 ~ 27136646 (+) False XLOC_033759
TCONS_00066050 other downstream 717220 27455340 ~ 27660728 (+) False XLOC_033761

Expression Profile

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