RNA id: TCONS_00069667


Basic Information

Item Value
RNA id TCONS_00069667
length 2164
RNA type mRNA
GC content 0.49
exon number 15
gene id XLOC_035519
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 14986833 ~ 15080573 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GcgttactttcaaaagtaacattCCCCAACACGGTATATCTATCAAACTCCTGCTGATTTAAGCGATGTAAAAATCTGGTTGTAAAATATGTGCTTTATTCTAGAAGATTGTTAGATATCCAAGATCTCTACGCACAAGATGTGGCGGATAGGAGGCGCTGTTGGACACAGACACATCCCTCCATTTCCCCGCGGCAGAGGCGCATTGTGTGTGTCGGAAATGGGAAAACCCTGAGCCGTGAGGTTGTCGCTGCTGGCTTCACTGGAGACTATAGAGAGTTACACGACGGCAGAGAGAGGGAAGAACAAGCAACCCTGGAGTTTTAAGCGGAGGAGACGTTAGTTCTTGGAGTTTTTTTTCGCCATGAGCTGGGGAACGGATCTTTGGGACCAGTTCGAGAATCtcgacaaacacacacagtgggGCATCGACTTCCTAGAGCGCTATGCAAAGTTTGTCAAGGAGCGTCTGGAGATCGAGCAGGCCTATGCAAAGCAGCTACGGAGTTTGGTTAAGAAGTATTGCCCAAAGCGCTCCAAAGACGATGAGCCCAGGTTCACGTCTTGTCTGTCATTCTACGCCATCCTGAATGAGCTGAATGACTATGCTGGTCAGCGAGAGGTTGTTGCAGAGGAGATGGGCCACAAAGTGTATGGAGAGCTCATGAGATACTCACAAGACCTGAAGGGAGAGAGGAAACATCATCTTCAGGAGGGACGGAAGGCCCAGCAGTATCTAGACCAGTGCTGGAAACACATGGACAATAGTAAAAAGAAGTTTGAACGGGAATGCAAAGAGGCGGAGAAATCGCAGATGATGTACGAGAGGTTAGACAATGACATCAACGCCACAAAGTCAGAAGTCGAAAAGGCAAAGTCCCAGCTGTATCTGAGACAACACATGGCGGAGGAGAGCAAGAACGAGTACGCGGCCCAGTTGCAGAACTTTAATGGTGAACAGTGGAAACATTTCAACCAGGCCATCCCTCAGATATTCACTAATCTTCAGAACATGGATGAACGGCGAACTGTGAAACTCGGTGAGATGTACCGGAGTTTTGCTGAGGTTGAGCGAAGAGTCATTCCAATTGTCTCAAAATGCCTGGAAGGCATGGTTACTGCTGCTAAAAATGTGGACGAGCGAaggGATTCTGGGATTGTAGTGGAGTCATTCAAGTCGGGTTTTGAACCCCCTGGTGATTTCCCTTTTGAAGACTTCAGTCAGAACATCCAGCGAACAGGGTCAGACAGCACCATTGGGACCCCCAAAACAGAGGGAGGCAAACCAGACCCCAAACACGCAATCAGCAGGACCAAAAACAAACTCTGGCTCTTTGGAAAGAAACCCAAGCTTCCCCCATCCATCCCACCTCCTTCCCGCCCGAGTTTTCCCTCTAGCCATTTCCAGACTCCTAAATTTCCTTCAGAGCGGAAAGCTAACCATCTAtctgaaatgagaaatgcaaaatCTAAGATCACGACCTTCCGAGCTGTGAGAAGAGGGGCGCCAACACTAGAGGATCTCAGCCACCTTCCCCCTGAACAGAGACGCAAAAAACTACAACAGCGGATCGATGAGCTGAATAAAGAACTGCAGAAGGAACAGGACCAAAGAGATGCTCTCAACAAAATGAAAGATGTCTATGAGAAGAATCCCCAGATGGGAGATCCTGGAAGTCTCCAGCCCAAGATATCAGAGACCATATGCAACATGGAGAAACTCCGCTCCGAGATCCATAAAAATGAGAGCTGGTTAGCAGAGGTGGAAGGAAAGCATGGATCTCGAAGTGAGCGGCGGTCCAGTGCAGATGTAAACCATCACGCTCCGCACGGAAGAGAGAGTCCTGAAGGCAGTTATACAGATGATCACAGTCAGGAGCATCGGTCTCCGCCACAGCCGGACCCTCACGAATTTGATGACGAGTTTGATGATGACGATCCACTCCCTGCCATCGGCCACTGCAAAGCTCTCTACTCTTTTGATGGATCTAATGAAGGCACATTAGTGATGAACGAGAACGAGGTGTTATACGTCATAGAGGAGGATAAAGGAGATGGCTGGACACGGGTTCGGAAAAATAGCGGAGAGGAGGGTTACGTCCCCACATCCTACGTGGAGATCACAATGGAGAAAAACAGCAAAGGTGCGGTCACCTACATATGA

Function

GO:

id name namespace
GO:0006897 endocytosis biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-155 Predicted to act upstream of or within autophagy; endocytosis; and signal transduction. Predicted to be located in cell cortex; cytoskeleton; and plasma membrane. Is expressed in several structures, including central nervous system; midbrain neural keel; neural plate; pronephric duct; and ventral mesoderm. Orthologous to human FNBP1L (formin binding protein 1 like).

Ensembl:

ensembl_id ENSDART00000171867

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00071920 lncRNA upstream 334183 14612986 ~ 14652650 (+) True XLOC_035513
TCONS_00072165 lncRNA upstream 425403 14558645 ~ 14561430 (+) True XLOC_035512
TCONS_00072164 lncRNA upstream 740480 14241585 ~ 14246353 (+) True XLOC_035509
TCONS_00069651 lncRNA upstream 966694 13971417 ~ 14020139 (+) True XLOC_035505
TCONS_00069673 lncRNA downstream 166813 15245108 ~ 15249624 (+) True XLOC_035520
TCONS_00069680 lncRNA downstream 398330 15476625 ~ 15479807 (+) True XLOC_035525
TCONS_00072167 lncRNA downstream 1181291 16259586 ~ 16265811 (+) True XLOC_035527
TCONS_00072168 lncRNA downstream 1485658 16563953 ~ 16582042 (+) True XLOC_035529
TCONS_00071921 lncRNA downstream 1492041 16570336 ~ 16577809 (+) True XLOC_035530
TCONS_00069664 mRNA upstream 1557 14915332 ~ 14985276 (+) False XLOC_035518
TCONS_00069666 mRNA upstream 3929 14959596 ~ 14982904 (+) True XLOC_035518
TCONS_00069665 mRNA upstream 11248 14959587 ~ 14975585 (+) False XLOC_035518
TCONS_00069662 mRNA upstream 76610 14886452 ~ 14910223 (+) False XLOC_035517
TCONS_00069663 mRNA upstream 76963 14890821 ~ 14909870 (+) True XLOC_035517
TCONS_00069672 mRNA downstream 161254 15239549 ~ 15250265 (+) False XLOC_035520
TCONS_00069674 mRNA downstream 173153 15251448 ~ 15253800 (+) True XLOC_035521
TCONS_00069675 mRNA downstream 176269 15254564 ~ 15268932 (+) False XLOC_035522
TCONS_00069677 mRNA downstream 191128 15269423 ~ 15277252 (+) False XLOC_035523
TCONS_00069679 mRNA downstream 199579 15277874 ~ 15286309 (+) True XLOC_035524
TCONS_00069660 other upstream 180543 14806174 ~ 14806290 (+) True XLOC_035515
TCONS_00069656 other upstream 571010 14415698 ~ 14415823 (+) True XLOC_035511
TCONS_00069654 other upstream 816261 14169903 ~ 14170572 (+) True XLOC_035508
TCONS_00069647 other upstream 1042692 13888818 ~ 13944141 (+) False XLOC_035504
TCONS_00069632 other upstream 1833255 13143165 ~ 13153578 (+) True XLOC_035494
TCONS_00069676 other downstream 176310 15254605 ~ 15259417 (+) True XLOC_035522
TCONS_00069678 other downstream 191568 15269863 ~ 15275437 (+) True XLOC_035523
TCONS_00069685 other downstream 945175 16023470 ~ 16079793 (+) False XLOC_035526
TCONS_00069690 other downstream 1598642 16676937 ~ 16688462 (+) False XLOC_035532
TCONS_00069701 other downstream 1693879 16772174 ~ 16810253 (+) True XLOC_035537

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000010_05538251_05562058.mRNA True 3002 mRNA 0.47 19 CI01000010 5537781 ~ 5562058 (-)