RNA id: TCONS_00006981


Basic Information

Item Value
RNA id TCONS_00006981
length 1505
lncRNA type inter_gene
GC content 0.40
exon number 7
gene id XLOC_003569
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 32505375 ~ 32510295 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGCTCAGGCAGAACATCAGAACAAGTCTggattttcctTCCAGGCACAAGCATATGGTGATCAATCCACACATTCCATAATCCCAGCaataaaagattttcaaacagtTATCAAAATGGACCAGAGGTTGTTACTGAGAGTCATCATCGCTGAAGATGATATAACATTGTCATCACCCACCACAACATTAGACACTGAGGGCAGCACAGCAGACACTGAGATCCTGTCGCCTGTAGGAGCATCACCATCGCTAAGACAACAGTGGCCAGAGTTCTTTGACATACCCAATTAGCACATATCATAGAGAGACAGGTGTTTGCTGAGTTTAATAGAATTGCCAGTAAGAATCTTGAGGGAGACTTCTTTGAGGCTCTGGACCAGTATGCCCCACGTTTCATTGAACTTTTCAAAACAAAATAGGGAACTGTTGGCCAGAAACTCAGGGAGCTGATGCAGCACATGAGCTGGATGACACCAGACGACACAGTACTTCGCTCTGTTGTCCTCAAAGGCATTCCCATTTTACTCGGTGATGACTCCAGTGAATTCTACAAGACCTGCTCTAATAGCATAAATTGTAATGCTGAAGAATGTGTGTCTTTTAGGATACAGAGAGAGACGAGGCCCTAGAATGCATCACTGTAGTCCTCACGAGGGTCAAAGCTCAGTGGACCTCCAGCCCATCTCCACTGCCATCATTCTGGAGGGAGGTATTCTCATGGATCATGTTAAAAACTTGCCTCAGGCAGTTTGTCCTTTGTTTGGTCTTACATATGCATTGCATTTGGATACCCAAAATGCATGGCAAATACACTCAACTTCATTCAGACTGTGATGCTTGGACTGGTAAAGAAAAACCTCCCACCAAAACTGTTAACTCCTGAAGAACAGTCTTCTGGGTTAGAACAGTAAAGAGCCGTCGGCTGTCAGATAGCACTTTGTAAGCTTTGCAGCCATTAATGTTCTCCTCTTATCAGAGAAAGTTTGATGCTTTCATGGAACTGTTCTCGCTTATTTACGTtctcaatggaaaaaaaaaagaatattccaTTAAAGTCTACCATGTTATGCAGGTATGCTAATGGTGGAAATAGTGCCATGTTGTGTTGCAATGAGTTGTTAGATGTTATTAGATGATAATGTCAGAAAATAACCTAGCAAGGTTATCCTGTTTACATTTGTGTTTTGGGAAAActtttaatgatgtttttatttgttttggtttaatcCTTGGACTGCTCACTTTGGGACACAAAAGTATGTTGTACTTTCGGTTTTGATCAGAAATGCACTGATTTTGCATGCACTGAAGTCGTCCTGTAGTTACCTGTTTAATATTGGGAGACATGCATACAATTAGCtcacagaaatgtttttattttatttttttatatatttttccatgtcattttatacagttaaatcAAACCACAACTTTGTTGTTTAGCTGCTGTTTTGTACTTGAATGTGCATTGAATAAATTTTGTAATGGAGCTGAATCAAA

Function

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0022612 gland morphogenesis biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0048850 hypophysis morphogenesis biological_process
GO:0048852 diencephalon morphogenesis biological_process
GO:0048853 forebrain morphogenesis biological_process
GO:0048855 adenohypophysis morphogenesis biological_process
GO:0006457 protein folding biological_process
GO:0033505 floor plate morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0021984 adenohypophysis development biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0007417 central nervous system development biological_process
GO:0007418 ventral midline development biological_process
GO:0007420 brain development biological_process
GO:0030902 hindbrain development biological_process
GO:0021508 floor plate formation biological_process
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0005839 proteasome core complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0101031 chaperone complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0000502 proteasome complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0005685 U1 snRNP cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0070003 threonine-type peptidase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008636 lncRNA upstream 85594 32401336 ~ 32420538 (+) False XLOC_003568
TCONS_00008637 lncRNA upstream 85594 32417836 ~ 32420538 (+) True XLOC_003568
TCONS_00006978 lncRNA upstream 87795 32401204 ~ 32418337 (+) False XLOC_003568
TCONS_00006977 lncRNA upstream 99716 32401204 ~ 32406416 (+) False XLOC_003568
TCONS_00008409 lncRNA upstream 278647 32223117 ~ 32227485 (+) True XLOC_003567
TCONS_00008638 lncRNA downstream 241346 32751641 ~ 32758412 (+) False XLOC_003571
TCONS_00008639 lncRNA downstream 241346 32751641 ~ 32760168 (+) False XLOC_003571
TCONS_00006983 lncRNA downstream 242025 32752320 ~ 32760168 (+) True XLOC_003571
TCONS_00006984 lncRNA downstream 662041 33172336 ~ 33175318 (+) False XLOC_003572
TCONS_00006985 lncRNA downstream 662043 33172338 ~ 33174332 (+) False XLOC_003572
TCONS_00006973 mRNA upstream 350920 31864921 ~ 32155212 (+) True XLOC_003562
TCONS_00006969 mRNA upstream 441098 31680513 ~ 32065034 (+) False XLOC_003562
TCONS_00006970 mRNA upstream 680246 31680557 ~ 31825886 (+) False XLOC_003562
TCONS_00006971 mRNA upstream 680248 31730680 ~ 31825884 (+) False XLOC_003562
TCONS_00006966 mRNA upstream 884458 31609481 ~ 31621674 (+) True XLOC_003560
TCONS_00006987 mRNA downstream 774542 33284837 ~ 33291898 (+) False XLOC_003574
TCONS_00006988 mRNA downstream 774623 33284918 ~ 33291390 (+) True XLOC_003574
TCONS_00006989 mRNA downstream 802306 33312601 ~ 33558093 (+) False XLOC_003575
TCONS_00006990 mRNA downstream 915959 33426254 ~ 33558093 (+) False XLOC_003575
TCONS_00006991 mRNA downstream 916215 33426510 ~ 33554791 (+) True XLOC_003575
TCONS_00006976 other upstream 314261 32191757 ~ 32191871 (+) True XLOC_003566
TCONS_00006975 other upstream 520088 31985928 ~ 31986044 (+) True XLOC_003565
TCONS_00006974 other upstream 582907 31923111 ~ 31923225 (+) True XLOC_003564
TCONS_00006972 other upstream 665943 31840068 ~ 31840189 (+) True XLOC_003563
TCONS_00006968 other upstream 838060 31646944 ~ 31668072 (+) True XLOC_003561
TCONS_00006982 other downstream 86178 32596473 ~ 32596588 (+) True XLOC_003570
TCONS_00006992 other downstream 918579 33428874 ~ 33428992 (+) True XLOC_003576
TCONS_00006995 other downstream 1307894 33818189 ~ 33827111 (+) True XLOC_003578
TCONS_00006996 other downstream 1725061 34235356 ~ 34237091 (+) False XLOC_003580
TCONS_00007005 other downstream 2538347 35048642 ~ 35055532 (+) False XLOC_003587

Expression Profile

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