RNA id: XM_039786709.1


Basic Information

Item Value
RNA id XM_039786709.1
length 1089
RNA type mRNA
GC content 0.41
exon number 4
gene id LOC120549656
representative True

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 7750645 ~ 7755085 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTGCGTTTGACCCCCGTTATCAGGTGAGCACTTTAGTTTCTGAGATGTAAACACTCTTACGGTTCGGTCTCCAGCAGCATAAATAGGCTGCAGGTCGCTGCTACTCTTACTGATAGATGAAGAACTGAAGACATGGATCCTAAAAAGTTTGATGCAGAGCCCGGAGACCTGATTGAGATCGACCGTGGGATATATAATCACTGGGCCCTCTACATCGGTGGAGAGGAAGTTGTTAATTTCGCTCTTCCAGATGATGATATTGCCTGGAAAAGCCCCAAAGGACAGGTGAAGCGTGAGAAGATCTGGAAAGTGGTCGGCAATGATAAATTCAAGATCAACAACCTCCTAGATAACAAGTACCAGCCTCGTGAGCGTGACATCATCGTGAAGGATGCCGTTAGGATGGTGGGTCTGGAGCTGCCGTACCATCTCATCTCTTGCAACTGCGAGCACTTTGTCACATACATGCGCTACGGCATTCCAGAGTCAACACAGGTTGCCGAAGCAGCTAAGACTGCAGATAGACTTCTAGGTGTGGGGATTTCATTTCTGGATGCTCTGAATGATTTCTTCCATAAAGATGCCAACAAAGAAGAAAGGAGATAACCAAGGAGATAACCAAGGAGAGAACCAAGGAGACATTACAATTGGCATTAATGAGACAGCAAGATGGAAGTAAAGATCCTGCtattgtttgattgttttgatTTGTCAATTCCCCTGGCAGTGATTATGATTTAAACATTGTTAATTAACTATTGTCTTTGTTGGTGTATTgctatcaacacacacacacacacacacacacatatacaaacatacaaaaatggacacacacacaactttcgATAAGATTAGGCAAGCTTTTGTGGAGAAAAATGAAGTTATAGGTGAATCCATGGCTGTTATGTTTGATATTAGTGCTCGTTGGGTAGGTTGACCCCATGGTTGTCTGTTTAATGTCTGAAATGTATAAAATGACTAATTTGGCATATAAAACAATTTGTATGattcttttaaatcaagtgAAAATTGAAGTTGTCATATTGTATTGatttgtgtaaaaaataaacagattttctttttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005637448.1 lncRNA upstream 87085 7661263 ~ 7663560 (+) True LOC120549854
XR_005637447.1 lncRNA upstream 89400 7660032 ~ 7661245 (+) True LOC120549853
XR_005637402.1 lncRNA upstream 245583 7501963 ~ 7505062 (+) True LOC120549545
TU271989 lncRNA upstream 406643 7338346 ~ 7344002 (+) True G200717
XR_005637283.1 lncRNA downstream 22850 7777935 ~ 7779509 (+) True LOC120548816
TU272117 lncRNA downstream 81562 7836647 ~ 7836954 (+) True G200821
TU272129 lncRNA downstream 143463 7898548 ~ 7898779 (+) True G200831
XR_005637385.1 lncRNA downstream 592995 8348080 ~ 8357752 (+) True LOC120549436
TU272181 lncRNA downstream 830990 8586075 ~ 8586414 (+) True G200871
XM_039785403.1 mRNA upstream 5601 7743697 ~ 7745044 (+) True LOC120548892
XM_039786706.1 mRNA upstream 13696 7713050 ~ 7736949 (+) False LOC120549654
XM_039786708.1 mRNA upstream 13696 7713094 ~ 7736949 (+) False LOC120549654
XM_039786707.1 mRNA upstream 13696 7713099 ~ 7736949 (+) True LOC120549654
XM_039786673.1 mRNA upstream 47951 7696934 ~ 7702694 (+) True LOC120549634
XM_039785404.1 mRNA downstream 9719 7764804 ~ 7772359 (+) True LOC120548893
XM_039786883.1 mRNA downstream 27334 7782419 ~ 7791256 (+) False LOC120549761
XM_039786882.1 mRNA downstream 27339 7782424 ~ 7791256 (+) True LOC120549761
XM_039785095.1 mRNA downstream 60097 7815182 ~ 7820733 (+) True foxi2
XM_039786938.1 mRNA downstream 135505 7890590 ~ 7898328 (+) True cfd
XR_005637554.1 other upstream 850301 6900139 ~ 6900344 (+) True LOC120550068
XR_005637532.1 other upstream 856223 6894216 ~ 6894422 (+) True LOC120550044
XR_005637539.1 other upstream 861728 6888711 ~ 6888917 (+) True LOC120550052
XR_005637535.1 other upstream 863089 6887350 ~ 6887556 (+) True LOC120550047
XR_005637540.1 other upstream 865884 6884554 ~ 6884761 (+) True LOC120550053
TU272417 other downstream 1465556 9220641 ~ 9221302 (+) True G201057
TU272715 other downstream 1953779 9708864 ~ 9817625 (+) True G201287
TU272771 other downstream 2235487 9990572 ~ 10007687 (+) True smoc1
unassigned_transcript_1139 other downstream 2274911 10029996 ~ 10034827 (+) True LOC120549541
unassigned_transcript_1140 other downstream 2275475 10030560 ~ 10031384 (+) True LOC120549542

Expression Profile