RNA id: TCONS_00073971


Basic Information

Item Value
RNA id TCONS_00073971
length 715
lncRNA type retained_intron
GC content 0.41
exon number 3
gene id XLOC_037670
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 11554089 ~ 11560432 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAGCGTGGTGATCGACAGCAGCCATGAATCCGCAGGAGCAGTTGGAGCAGAGGGGAAAGTTTCGGATGACTGTGTTCGAGGAGGAGCATTTCCAGGGCAAGAGCTGCGAATTCTCCTTCGAGTGCCAGAACATTCTGGAAAGAGACTTCAGGAAGATCCGCTCCATTAAGGTGGAGAACGGACCCTGGGTGGGGTACGAGTATCCTGAGTTCCAGGGCCAGCAGTTTATCCTGGAGAAAGGAGACTATCCCTGTTACCAGGCCTGGAGCGGCAACAGCAGCTACAGAACAGAGCATATGCTCTCTTTCAGACCCATTAAATGTGCTAACCACAGCGACAGTAAGATAACCCTCTATGAGTGTGAAGACTTCATGGGCCGTAAATTTGAGATGTGTGAGGACTACCCTTCCATTCAAGCCATGGGCTGGTGCAGCAAGGAGGTTCCCTCAATCAAAGTCAACTCTGGAGCGTAAGTCACTTCCCCAGCCTTTCTGAACACATTCTATATGCTATTATATTATAAGTAACTAAATATTAGTTTATAGTATAAGGTAAACTATTTAttgaaagtataaataaataaataaataaataaataaataaataaatattatagttgTTTGtctatgtgtttgagtaaaatgtatatatttttaaattctgtaaactactgatgaccCTTATtccaaatttaattaaatttttttatttgca

Function

GO:

id name namespace
GO:0002088 lens development in camera-type eye biological_process
GO:0007601 visual perception biological_process
GO:0005575 cellular_component cellular_component
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-324 Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Is expressed in lens and solid lens vesicle. Human ortholog(s) of this gene implicated in cataract 42. Orthologous to human CRYBA2 (crystallin beta A2).

Ensembl:

ensembl_id ENSDART00000139445

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00074962 lncRNA downstream 1184451 10368380 ~ 10370625 (-) True XLOC_037663
TCONS_00073926 lncRNA downstream 2184210 9355372 ~ 9370866 (-) True XLOC_037651
TCONS_00073922 lncRNA downstream 2266006 9286419 ~ 9289070 (-) True XLOC_037649
TCONS_00073923 lncRNA downstream 2266016 9286419 ~ 9289060 (-) False XLOC_037649
TCONS_00073924 lncRNA downstream 2266037 9286419 ~ 9289039 (-) False XLOC_037649
TCONS_00075298 lncRNA upstream 11203 11571312 ~ 11572249 (-) False XLOC_037671
TCONS_00075299 lncRNA upstream 11203 11571312 ~ 11572354 (-) False XLOC_037671
TCONS_00075300 lncRNA upstream 35878 11595987 ~ 11598944 (-) False XLOC_037673
TCONS_00073976 lncRNA upstream 85120 11645229 ~ 11655031 (-) True XLOC_037673
TCONS_00075301 lncRNA upstream 262270 11822379 ~ 11855293 (-) False XLOC_037675
TCONS_00073964 mRNA downstream 3468 11548233 ~ 11551608 (-) False XLOC_037669
TCONS_00073963 mRNA downstream 4365 11548233 ~ 11550711 (-) False XLOC_037669
TCONS_00073966 mRNA downstream 5697 11548889 ~ 11549379 (-) False XLOC_037669
TCONS_00073962 mRNA downstream 291848 11245962 ~ 11263228 (-) True XLOC_037668
TCONS_00073959 mRNA downstream 749845 10781687 ~ 10805231 (-) False XLOC_037666
TCONS_00073974 mRNA upstream 16393 11576502 ~ 11587070 (-) True XLOC_037672
TCONS_00073975 mRNA upstream 37391 11597500 ~ 11655031 (-) False XLOC_037673
TCONS_00073977 mRNA upstream 104688 11664797 ~ 11676491 (-) True XLOC_037674
TCONS_00073980 mRNA upstream 346661 11906770 ~ 12034444 (-) True XLOC_037676
TCONS_00073981 mRNA upstream 699360 12259469 ~ 12269966 (-) False XLOC_037678
TCONS_00073967 other downstream 3372 11551604 ~ 11551704 (-) True XLOC_037669
TCONS_00073965 other downstream 4679 11548772 ~ 11550397 (-) False XLOC_037669
TCONS_00073961 other downstream 708527 10845918 ~ 10846549 (-) True XLOC_037667
TCONS_00073935 other downstream 1749757 9743559 ~ 9805319 (-) False XLOC_037657
TCONS_00073936 other downstream 1749757 9770335 ~ 9805319 (-) True XLOC_037657
TCONS_00073973 other upstream 11864 11571973 ~ 11572055 (-) True XLOC_037671
TCONS_00073978 other upstream 262270 11822379 ~ 11855305 (-) True XLOC_037675
TCONS_00073998 other upstream 1022157 12582266 ~ 12594717 (-) False XLOC_037682
TCONS_00073999 other upstream 1024534 12584643 ~ 12594723 (-) False XLOC_037682
TCONS_00074000 other upstream 1024794 12584903 ~ 12594705 (-) False XLOC_037682

Expression Profile

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