RNA id: TCONS_00073995


Basic Information

Item Value
RNA id TCONS_00073995
length 1912
RNA type mRNA
GC content 0.50
exon number 14
gene id XLOC_037681
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 12468500 ~ 12575776 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCCAGTAAAAGAGTTTGAGCAGGAGCAGAGTTGTGTATATGTAGCAGGGGGGTCCGGCTGCATCTGGGGGGTGACTGCTGATTTTCAgcgcatttattttattttattttttctattttaatttctcATTCTTTTCCTTCGGGAAATCCACCGCACGCGCGCACACGCTGATATATATTTTGGACGTACACATTTCTCGTGTAGACCATGAACAAACTCTATGTGGGCAATCTGAGTCCTTCGGTGACCGTGGAGGACCTGAAGCAGCTCTTCGGCGAGAGGAAGCTGCCCGTGACCGACCAGGTCCTGCTCAAATCCGGCTATGCCTTCGTGGACTTCCCCGACCAGAACTGGGCGATTAAAGCCATCGAGACGCTCTCCGGGAAAGTTGAATTACATGGGAAAGTGATCGAGGTCGACTACTCTGTTCCTAAAAAATTGagGAGTCGGAAGATTCAGATCCGGAACATTCCTCCTCATCTCCAGTgggagGTTTTGGACAGCTTATTAGCACAGTATGGTACTGTAGAAAATGTGGAGCAAGTTAACACTGACACTGAAACAGCAGTGGTGAATGTGACGTACTCGACGAAAGAGGAGGCTAAAGTAGCTGTGGAGAAGTTAATAGAACAGACGTTTGAGGATTACTCCTTTAAAGTGTCTTATATCATGGATATGGATGCTGCTGCAGCTCTGCCTGGGACCCGGAATCGCCGGGGGGGAAGGACCTCACGGGAGCAGGACTCTCAGCCTGGGACGTCTGGAAGCTCCCTGGGATCCCGGCAGAAGCAGCCAGATTTCCCCCTGCGCATGCTGGTGCCCACACAGTTTGTGGGAGCCATCATTGGCAAAGAGGGACTCACAATCAAGAACATCACCAAACAGACGCAGTCGAAGGTGGACATCCATCGCAAGGAGAACGCAGGAGCGGCAGAGAAACCCATCACCATTCACTCCACCCCTGAGGGCTGCTCCACCGCGTGCCACATGATCATGGACATCATGCAGAAAGAGGCTGTAGACACAAAGGTAACTGAGGATATTCCTCTGAAGATCCTGGCCCACAACAGCCTGGTCGGAAGACTGATCGGGAAAGAGGGCAGAAACCTGAAGAAGATTGAAGAGGACACAGAGACCAAAATAACCATCTCCTCTTTACAGGACTTAACGATTTATAACCCGGAGAGAACCATTATAGTGAAGGGGAGCATCGAGGCCTGTTGTAGGGCCGAGGTGGAGATCATGAAGAAGCTGAGGGAAGCCTACGAAAACGACGTTGCTGCTATTAACCAACAATCCAACCTTATCCCTGGGTTGAGCCTGAGCGCCCTGGGCATCTTTTCAACCGGTCTGTCAGTGTTGCCACCAGCTGCTGGACCCAGAGGCATCCCACCCGTACCCCCAACCGGCTACAACCCTTTTCTTGGTCACTCATCACAGCTGGGTGGTCTGTACGGCGTCCCACCTGCCAGTGGCATCTCTCACCAGCACACACAGGCTCCTGAACAGGAGGTGGTCTACCTCTTTATTCCAACTCAGGCTGTTGGTGCTATTATTGGCAAGAAGGGCCAACATATAAAACAACTGGCGCGATTTGCAGGAGCCTCTATTAAGATCGCTCCCGCAGAGAGTCCTGATGTCACTCAGAGGATGGTCATCATCACTGGCCCACCAGAAGCTCAGTTTAAGGCGCAGGGCAGGATATTTGGAAAACTGAAAGAGGAGAACTTCTTTACTGCAAAAGAAGAAGTAAAGCTGGAGACGCATATAAAAGTGCCATCTTCAGCAGCTGGGAGGGTTATAGGGAAAGGAGGGAAAACGGTGAGAATCTGCTAGATTATAGAAGTAGAAACAACCAGTGAAGTGCCAACCTAGTAGGATGATTACTCTGaaataaaggggtagttcactc

Function

GO:

id name namespace
GO:0051252 regulation of RNA metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0007399 nervous system development biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function
GO:0003730 mRNA 3'-UTR binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-44 Predicted to enable mRNA 3'-UTR binding activity. Predicted to be involved in nervous system development; regulation of RNA metabolic process; and regulation of gene expression. Predicted to act upstream of or within mRNA transport. Predicted to be active in cytosol and nucleus. Human ortholog(s) of this gene implicated in type 2 diabetes mellitus. Orthologous to human IGF2BP2 (insulin like growth factor 2 mRNA binding protein 2).

Ensembl:

ensembl_id ENSDART00000182695

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075305 lncRNA downstream 74898 12352152 ~ 12401798 (-) True XLOC_037678
TCONS_00075304 lncRNA downstream 304911 12163937 ~ 12171785 (-) True XLOC_037677
TCONS_00075303 lncRNA downstream 304914 12076843 ~ 12171782 (-) False XLOC_037677
TCONS_00075302 lncRNA downstream 304921 12076843 ~ 12171775 (-) False XLOC_037677
TCONS_00074001 lncRNA upstream 14180 12589956 ~ 12594777 (-) True XLOC_037682
TCONS_00074006 lncRNA upstream 79529 12655305 ~ 12656425 (-) True XLOC_037685
TCONS_00074010 lncRNA upstream 151410 12727186 ~ 12736053 (-) False XLOC_037686
TCONS_00075306 lncRNA upstream 314122 12889898 ~ 12902782 (-) False XLOC_037688
TCONS_00075307 lncRNA upstream 323392 12899168 ~ 12903013 (-) True XLOC_037688
TCONS_00073989 mRNA downstream 32970 12428226 ~ 12443726 (-) True XLOC_037680
TCONS_00073987 mRNA downstream 51902 12405121 ~ 12424794 (-) False XLOC_037679
TCONS_00073988 mRNA downstream 51905 12405646 ~ 12424791 (-) True XLOC_037679
TCONS_00073986 mRNA downstream 52465 12403289 ~ 12424231 (-) False XLOC_037679
TCONS_00073985 mRNA downstream 206791 12265705 ~ 12269905 (-) False XLOC_037678
TCONS_00073996 mRNA upstream 3301 12579077 ~ 12594759 (-) False XLOC_037682
TCONS_00073997 mRNA upstream 3635 12579411 ~ 12595003 (-) False XLOC_037682
TCONS_00074002 mRNA upstream 20262 12596038 ~ 12625385 (-) False XLOC_037683
TCONS_00074003 mRNA upstream 22305 12598081 ~ 12624622 (-) True XLOC_037683
TCONS_00074004 mRNA upstream 72929 12648705 ~ 12652984 (-) True XLOC_037684
TCONS_00073978 other downstream 621391 11822379 ~ 11855305 (-) True XLOC_037675
TCONS_00073973 other downstream 904641 11571973 ~ 11572055 (-) True XLOC_037671
TCONS_00073967 other downstream 924992 11551604 ~ 11551704 (-) True XLOC_037669
TCONS_00073965 other downstream 926299 11548772 ~ 11550397 (-) False XLOC_037669
TCONS_00073961 other downstream 1630147 10845918 ~ 10846549 (-) True XLOC_037667
TCONS_00073998 other upstream 6490 12582266 ~ 12594717 (-) False XLOC_037682
TCONS_00073999 other upstream 8867 12584643 ~ 12594723 (-) False XLOC_037682
TCONS_00074000 other upstream 9127 12584903 ~ 12594705 (-) False XLOC_037682
TCONS_00074018 other upstream 309976 12885752 ~ 12887858 (-) True XLOC_037687
TCONS_00074026 other upstream 1263966 13839742 ~ 13853399 (-) True XLOC_037696

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000037_00002995_00023250.mRNA True 3454 mRNA 0.49 18 CI01000037 2155 ~ 23350 (-)