RNA id: TCONS_00073985


Basic Information

Item Value
RNA id TCONS_00073985
length 759
RNA type mRNA
GC content 0.46
exon number 7
gene id XLOC_037678
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 12259469 ~ 12401871 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAAATTTTGCACTCTCCGGTATTCGGTAAAGCAGATCTAATCTTCTGTTCGTTTACTGCCTGTTAGTCATCTAGTATGGAGATACAGAGTTGTATTGAACCAATGACGCTCGGCTCTCCAACCTCTCCTAAGCCTGGGGCTCAGTTTTTACCGGGGTTTCTAATGGGAGACCTGCCTGCTCCTGTCACTCCCCAGCCCAGGTCTTTTGGTTTGACAGGTGGAGCAGAAATCAGGTCTCCTCTTCTTGCTGGTGGGTCTCCTCCACAGCCTGTAGTCCCAACACCTAAAGATAAGAGCGGAGCCCCTCCAGTCAGAAGCATCTATGATGACCTCAATGGCTCTGCTGTGGGAATGTCACCACTTGCTGCTCGCAAACAAAATTTGTTTTCACAGCCATTTGCTGGAGTTCACACACCATTGTCTGGTCTACAGGGTACACCAGGAACAGTTTCTAACTTTTTTAGTCCCGTGAGTCAGCAGAGGAAAACAACCCTTTCACCAGCTCAAGTAGATCCGTTCTTCACACAAGGAGATGCTCTGTCCTCTGAAGACCAGCTCGATGACACCTGGATCACAGTGTTTGGGTTCCCTCCAGCATCTGCTTCATACATCCTTTTACAGTTTGCACAATATggaaacatattaaaacatgtaATGTCTAATACGGGCAATTGGATGCATGTTCAATATCAGTCAAAACTGCAGGCGAGAAAGGCTCTCAGTAAAGATGGAAAGATATTCGGAGAAGCCATAATGAT

Function

GO:

id name namespace
GO:0006607 NLS-bearing protein import into nucleus biological_process
GO:0006913 nucleocytoplasmic transport biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006999 nuclear pore organization biological_process
GO:0015031 protein transport biological_process
GO:0051028 mRNA transport biological_process
GO:0005634 nucleus cellular_component
GO:0005643 nuclear pore cellular_component
GO:0031965 nuclear membrane cellular_component
GO:0044613 nuclear pore central transport channel cellular_component
GO:0044615 nuclear pore nuclear basket cellular_component
GO:0017056 structural constituent of nuclear pore molecular_function
GO:0005543 phospholipid binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003697 single-stranded DNA binding molecular_function

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko05014 Amyotrophic lateral sclerosis
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-030131-9407 Predicted to enable phospholipid binding activity and single-stranded DNA binding activity. Predicted to be a structural constituent of nuclear pore. Predicted to be involved in NLS-bearing protein import into nucleus; nuclear pore organization; and regulation of transcription, DNA-templated. Predicted to act upstream of or within mRNA transport; nucleocytoplasmic transport; and protein transport. Predicted to be located in nuclear membrane. Predicted to be part of nuclear pore central transport channel and nuclear pore nuclear basket. Orthologous to human NUP35 (nucleoporin 35).

Ensembl:

ensembl_id ENSDART00000144734

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075304 lncRNA downstream 93920 12163937 ~ 12171785 (-) True XLOC_037677
TCONS_00075303 lncRNA downstream 93923 12076843 ~ 12171782 (-) False XLOC_037677
TCONS_00075302 lncRNA downstream 93930 12076843 ~ 12171775 (-) False XLOC_037677
TCONS_00074963 lncRNA downstream 93936 12143069 ~ 12171769 (-) False XLOC_037677
TCONS_00073979 lncRNA downstream 410400 11822379 ~ 11855305 (-) False XLOC_037675
TCONS_00075305 lncRNA upstream 82247 12352152 ~ 12401798 (-) True XLOC_037678
TCONS_00074001 lncRNA upstream 320051 12589956 ~ 12594777 (-) True XLOC_037682
TCONS_00074006 lncRNA upstream 385400 12655305 ~ 12656425 (-) True XLOC_037685
TCONS_00074010 lncRNA upstream 457281 12727186 ~ 12736053 (-) False XLOC_037686
TCONS_00075306 lncRNA upstream 619993 12889898 ~ 12902782 (-) False XLOC_037688
TCONS_00073980 mRNA downstream 231261 11906770 ~ 12034444 (-) True XLOC_037676
TCONS_00073977 mRNA downstream 589214 11664797 ~ 11676491 (-) True XLOC_037674
TCONS_00073975 mRNA downstream 610674 11597500 ~ 11655031 (-) False XLOC_037673
TCONS_00073974 mRNA downstream 678635 11576502 ~ 11587070 (-) True XLOC_037672
TCONS_00073970 mRNA downstream 705273 11554405 ~ 11560432 (-) False XLOC_037670
TCONS_00073986 mRNA upstream 133384 12403289 ~ 12424231 (-) False XLOC_037679
TCONS_00073987 mRNA upstream 135216 12405121 ~ 12424794 (-) False XLOC_037679
TCONS_00073988 mRNA upstream 135741 12405646 ~ 12424791 (-) True XLOC_037679
TCONS_00073989 mRNA upstream 158321 12428226 ~ 12443726 (-) True XLOC_037680
TCONS_00073990 mRNA upstream 198595 12468500 ~ 12493628 (-) False XLOC_037681
TCONS_00073978 other downstream 410400 11822379 ~ 11855305 (-) True XLOC_037675
TCONS_00073973 other downstream 693650 11571973 ~ 11572055 (-) True XLOC_037671
TCONS_00073967 other downstream 714001 11551604 ~ 11551704 (-) True XLOC_037669
TCONS_00073965 other downstream 715308 11548772 ~ 11550397 (-) False XLOC_037669
TCONS_00073961 other downstream 1419156 10845918 ~ 10846549 (-) True XLOC_037667
TCONS_00073998 other upstream 312361 12582266 ~ 12594717 (-) False XLOC_037682
TCONS_00073999 other upstream 314738 12584643 ~ 12594723 (-) False XLOC_037682
TCONS_00074000 other upstream 314998 12584903 ~ 12594705 (-) False XLOC_037682
TCONS_00074018 other upstream 615847 12885752 ~ 12887858 (-) True XLOC_037687
TCONS_00074026 other upstream 1569837 13839742 ~ 13853399 (-) True XLOC_037696

Expression Profile

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