RNA id: TCONS_00008708


Basic Information

Item Value
RNA id TCONS_00008708
length 2508
lncRNA type sense_over
GC content 0.44
exon number 1
gene id XLOC_003741
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 44548209 ~ 44603789 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCAGATATAGACGAGTGCCAGCCTGGTCGATGCCACAGTGATGCCGTCTGCTTCAACACTCAGGGCTCCTTCAGCTGCCAGTGTCGGCCCGGGTTTACTGGAGACGGCTTCAGCTGCACTCCTGGAGCCGGTGGGTGGACTAGAGTAAATTAGAGTAAACGTTCTGCTGAAAATATAAAagagcagggctatcagtcatttagggtggggtttttagttatttagggcggagctatcagtcatttagggcatacctatcagtgctttagggtggagttatTGGTCATTATGGGCAGTAATTaaaggtggagctatcagtcctttagggcggggctatcagtcatttagggaaaAGATATaggtcctttagggcggagctatcagtctttaagggtggggctgtcagtcatttagggcagggctatcagtcatttagggcagagctatcagtcatttagggcagagctatcagtaattttgggcggggctgtcagtcatttagggcaaagctatcagtcctttagggcagagctatcagtgctttagggcagagTTATTGGTCATTATGGGCAGGGCTATTAGTaatttaaggtggagctatcagtcctttagggtggggctatcagtcatttaaccTGGAGCAATCAGCCATTTATGGAGGGGTTTTGAGTCCTTTTggacagggctatcagtcatttagggtggggtttttagttatttagggcggagctatcagtcatttaggacgtagctatcagtgctttagggcggagctatcagtgctttaaggcGGAGTTATTGGTCATTATGGGCAGGACTATTAGTgatttaaggtggagctatcagtcatttagggcagggctatcagtcatttagggcggggctatcagtcatttagggcagagctatcagtaattttgggcggggctgtcagtcatttagggcagagctatcagtaattttgggcggggctgtcagtcatttagggcagagctatcagtaattttgggcggggctgtcagtcatttagggcagagctatcagtaattttgggcggggctgtcagtcatttagggcagagctatcagtaattttgggcggggctgtcagtcatttagggcagggctatcagtcatttagggcggggctatcagtcatttagggcagagctatcagttattttgggcggggctgtcagtcatttagggcaaagctatcagtcctttattgctgagctatcagtgctttagggcgcaGTTATTGGTCATTATGGGCAGGGCCATTAGTaatttaaggtggagctatcagtcctttagggcggggctatcagtcatttagggaaaagatatcagtcctttagggcggagctatcagtctttaagggtggggctgtcagtcatttagggcggagttatcagtcatttagggcggggctatcagtcctttagggcagagctatcagtcatttagagcggGGCTATCTGTCCTTAAGGGCAGGGCtatcatttagggcggagctatcagtcatttagagtagggctatctgtcatttaaggtggagctatcagttatttagggcgaaGCTATCAGTCCACTAGGGAGGAgctattagttttttttagggcggagctatcaatgGGTGTCTCGTTTCTGCTCTGCATCCATTTGTCAATCTTCCTCCTTTTTTTTGCAACCCTCCCTGTCTTTCAACAATCCAATCGATTCCCAAAGAACTAAATCCTGCACCACCAACATTTGTTTCACATTTTAGGACAGTATCAAATGGATGTACGTCATGATAGAGGAAAAAAACAATCTTAACTTTGTTTTGTGGCGACTTTAAATCAAAAACCTTTTCCCTAAATTTGAGTGCTCCCCCACTTTTCAAAAAAAAGTTACACCCATGGTTTTTGGTCACCTACATTTTGCATCATTAAACCATTAAACTATTTGACTTCATTAAACCATCATTAAAGCATTTGACTTTTGCcttaataaactcctaatttgctgcttattaatagtcatTCATGTATTGGTCAGGCTTAGATAAATAACTGGAGCACACTGGAGAAAACTCTgcatttgtttctgtgtgtgttttctttctcCCACTCGTTTctcatggctgtgtgtgtgtgtgtgtgtgtgtgcttgtttgtaaTGCTCAGATAAGAAACACTGATTGTCATTAGTCTGAGTGTTTTCCTTCCTCCTCAGGTTGGGGGTTTTCTGGGGCTGGTTTACATTATCATATGGTTCTCATACAGCCGTTGGGTCTCGACACGCCTGTTCACAGTCAGCAGACAGGAATGTGTTTTATTTACTGTACTGATTATCTGCAGCACCGCCATACTAGCACAATATTACACCTGCTTAACTAGAATTATTATATATGAGGACATAAGAAAATCATGCACACAATGTattcaaacacaaaataagagATTAATATATAAagctgaggtcagaattattagcccacctttgactttttagatttttgt

Function

GO:

id name namespace
GO:0007160 cell-matrix adhesion biological_process
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008707 lncRNA upstream 42416 44539504 ~ 44542998 (+) True XLOC_003740
TCONS_00008706 lncRNA upstream 135051 44447688 ~ 44450363 (+) True XLOC_003738
TCONS_00008705 lncRNA upstream 186044 44394335 ~ 44399370 (+) False XLOC_003737
TCONS_00008434 lncRNA upstream 189251 44395417 ~ 44396163 (+) True XLOC_003737
TCONS_00008704 lncRNA upstream 193873 44385798 ~ 44391541 (+) True XLOC_003736
TCONS_00008435 lncRNA downstream 13378 44601299 ~ 44601938 (+) True XLOC_003741
TCONS_00008709 lncRNA downstream 88585 44676506 ~ 44752657 (+) False XLOC_003743
TCONS_00008710 lncRNA downstream 88612 44676533 ~ 44752657 (+) False XLOC_003743
TCONS_00008711 lncRNA downstream 88639 44676560 ~ 44694038 (+) True XLOC_003743
TCONS_00008712 lncRNA downstream 204582 44792503 ~ 44803305 (+) True XLOC_003745
TCONS_00007210 mRNA upstream 60482 44503774 ~ 44524932 (+) True XLOC_003739
TCONS_00007209 mRNA upstream 69534 44502410 ~ 44515880 (+) False XLOC_003739
TCONS_00007208 mRNA upstream 222382 44356707 ~ 44363032 (+) True XLOC_003734
TCONS_00007207 mRNA upstream 222383 44356504 ~ 44363031 (+) False XLOC_003734
TCONS_00007202 mRNA upstream 276382 44300548 ~ 44309032 (+) False XLOC_003729
TCONS_00007216 mRNA downstream 29100 44617021 ~ 44635060 (+) False XLOC_003742
TCONS_00007217 mRNA downstream 34098 44622019 ~ 44637842 (+) False XLOC_003742
TCONS_00007218 mRNA downstream 34551 44622472 ~ 44632802 (+) False XLOC_003742
TCONS_00007219 mRNA downstream 34555 44622476 ~ 44633301 (+) False XLOC_003742
TCONS_00007220 mRNA downstream 34562 44622483 ~ 44635061 (+) True XLOC_003742
TCONS_00007206 other upstream 249634 44335666 ~ 44335780 (+) True XLOC_003733
TCONS_00007205 other upstream 250092 44328774 ~ 44335322 (+) True XLOC_003732
TCONS_00007204 other upstream 250503 44324761 ~ 44334911 (+) False XLOC_003732
TCONS_00007203 other upstream 259122 44324761 ~ 44326292 (+) False XLOC_003732
TCONS_00007198 other upstream 560536 44024762 ~ 44024878 (+) True XLOC_003725
TCONS_00007223 other downstream 263553 44851474 ~ 44851593 (+) True XLOC_003747
TCONS_00007247 other downstream 800277 45388198 ~ 45393530 (+) False XLOC_003764
TCONS_00007249 other downstream 800289 45388210 ~ 45392663 (+) False XLOC_003764
TCONS_00007251 other downstream 804290 45392211 ~ 45394780 (+) False XLOC_003764

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU95980 True 405 lncRNA 0.44 1 CI01000013 10480455 ~ 10480859 (+)
tiger barb (Puntius tetrazona) TU95980 False 1968 lncRNA 0.33 2 NC_056706.1 18598491 ~ 18600484 (+)