RNA id: TCONS_00008709


Basic Information

Item Value
RNA id TCONS_00008709
length 2267
lncRNA type sense_over
GC content 0.42
exon number 5
gene id XLOC_003743
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 44676506 ~ 44752657 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACAGAACTACATGTGCATCGCGGAGGATTACAGTTTTGCGCGTCATGTGACTCGTGCTCCGGCTCGGCTGTTTGTTCATCGCGGATGACTCTGACGGTTGGAGAGACGATCTTTCGTGATAACGGGTGATTGATTACTTTTGCGAAAACGTCAAAAATTCTCCCGATTATGATGGATATTTGTCTTTAGATCAGaactgtcttgagcatctgtctgcgctcccGTCTCAAGCCTCCAAAAGCCACCGGGTTCATTGCGTTTGGTCttcgtcttctgaggcgcagCTCATTTATTAGAGGAGAACAAACACCACAGTGGAGAATCCCAACAGTGCAGCAAACTACAGGCTCTCAGCTGTGAGAAAGATTACTGAAGGCTGCAAGGAAAAGCAGGTCATAATAACAGCAGAGAGCGAGGCCGAGGGGAAAAAACATTCAGCTGATCACGAGCCCTGATGTCAAGAAGAGGCCTGAAGGAATCTCTGTGGGCTGCAGTTCACATGACGGATGAAATCATCGCAGAGTACAGTCTCTCTTCTTCACCCCTGCACTGCGAACTTCACATATACAGTCTGGCAAATGGAAATGAGTTTTCCGCATCACACACAGCAGAAAGTGTGCATGAAAAACAGCGGAGCGTCCAGCAGCTCGCGGCTCATTGTGTCCACATCCGGCTCTGGATAATTCCAGACACTTTCCCAGAGGCATGTGCTGGACTGCGGCCCGGAGCGACTGCTATGCACGTCCTCTCCCATTCCTAAACAAAGAGAAACTTTAATAACAGACTGCGCTTGCATACTGAGGAACGCAGGAATAAACCGTCTTTCATTGTGTTTTTTCGTGCACATCTGGATTTGGGTTGGAAAGGCCGTGTGGCGTTTCCTCCTCCGCTGGCAGTCGAGCTGAAGATTGTGGGAAGAAAATAATCCAGTGTCAtccagtgcagtgtgtgtgtgtgtgtgctggttttagtggtttacaaggactGAAATTTGAATattgacatgggtatgacctagctgtactctattattgtcatttatgaGGACATGTATTGTGCCCTCGTAATTCAAAATGTTTAATGATCATATTTAATGGGGGTTTTCATGGTTTACAAGGACTAATATTTGTTTAATGacctgggaatgacctttttgtACTCTATTAATGTAGCTTATAAGGACATGTATTGTGCCTCCGTAATTCAAATTGTTTACCAATCACTGAAATGTGTATAacgacatgggtatgacctagttgtATTCTCTTGTGTCTTcgaaattcaaaacatttaaaaatcatatttaatgatGTTCAATTTTGCCACAGGATTGctctgacggttgggtttaggtgtggggtcatacaataagcatttttttcctgtataaaatacattgcagAGTCTTtcagagtcctcataaaccaccggtacctgtgtgtgtttagtgtgtgtgtttagtgtgtgtgtttaatggctgtgtgtgtgtgtgtgtgtgtgtgctggttttgGTGATTTACAAGGACtgaatttgtataatgacatgggtgtgACGTAGCTGTACTGTATTTATGTGGTTTATAAGGACATGTGTTGTGGCTTTGTAATTCAAAATGTTTAAGAATCTTATTTAATAAGGTTGAATTTTTTTCACAAGTTTGctatgagggttgggtttaggtgttggaccatataataagcatttttttttgtataaaacacATTGTGCCTATATGcagagtcctcgtaaaccaccaataccaatgtgtgtttgcgtgtgctgATTTTGTTGATTTACAGTGACCGAAATATGTATGATGACCTGTGTATGACCTAGCTGTACTCTTATCAATGTTTATGAGGACATTCAttgtgtcctcgtaattcaaaacatttaaaaatcatatttaatggtGTTCAATTTTGCCACATGATTGCtctaagggttgggtttagggctaaGATCATATAATACTCCATAAAACACTGTGCCAATGcagagtccttgtaaaccaccatcACCAATGTATGTGTGGAGATGAAATTGTGACCACGCTCTTGTGGTTGTGTGTGTTGGCGCTGGCTAAAAGTAGCctgttttgtgcatgtgtgtttgtgtaggcaGCCGTACAGAACCAAGGCTGGAAGTGTTTGTGCATTTATGAGCAGTTGTGTGGGTTGAGTGTCATATAGATCTCCTTTCCCCAGTAAGCTATGTTGATGATTATGGTTTTGTGATATTTAATGCATGTATGTTGATGTGGGT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008435 lncRNA upstream 74568 44601299 ~ 44601938 (+) True XLOC_003741
TCONS_00008708 lncRNA upstream 88585 44585414 ~ 44587921 (+) False XLOC_003741
TCONS_00008707 lncRNA upstream 133508 44539504 ~ 44542998 (+) True XLOC_003740
TCONS_00008706 lncRNA upstream 226143 44447688 ~ 44450363 (+) True XLOC_003738
TCONS_00008705 lncRNA upstream 277136 44394335 ~ 44399370 (+) False XLOC_003737
TCONS_00008712 lncRNA downstream 39846 44792503 ~ 44803305 (+) True XLOC_003745
TCONS_00008713 lncRNA downstream 155312 44907969 ~ 44911219 (+) False XLOC_003748
TCONS_00008714 lncRNA downstream 155337 44907994 ~ 44911219 (+) False XLOC_003748
TCONS_00008715 lncRNA downstream 155349 44908006 ~ 44911219 (+) True XLOC_003748
TCONS_00008716 lncRNA downstream 383358 45136015 ~ 45143838 (+) False XLOC_003752
TCONS_00007217 mRNA upstream 38664 44622019 ~ 44637842 (+) False XLOC_003742
TCONS_00007220 mRNA upstream 41445 44622483 ~ 44635061 (+) True XLOC_003742
TCONS_00007216 mRNA upstream 41446 44617021 ~ 44635060 (+) False XLOC_003742
TCONS_00007219 mRNA upstream 43205 44622476 ~ 44633301 (+) False XLOC_003742
TCONS_00007218 mRNA upstream 43704 44622472 ~ 44632802 (+) False XLOC_003742
TCONS_00007222 mRNA downstream 52028 44804685 ~ 44855209 (+) True XLOC_003746
TCONS_00007224 mRNA downstream 180195 44932852 ~ 44936320 (+) True XLOC_003749
TCONS_00007225 mRNA downstream 340209 45092866 ~ 45107913 (+) True XLOC_003750
TCONS_00007226 mRNA downstream 358208 45110865 ~ 45126501 (+) True XLOC_003751
TCONS_00007228 mRNA downstream 400447 45153104 ~ 45158055 (+) False XLOC_003753
TCONS_00007206 other upstream 340726 44335666 ~ 44335780 (+) True XLOC_003733
TCONS_00007205 other upstream 341184 44328774 ~ 44335322 (+) True XLOC_003732
TCONS_00007204 other upstream 341595 44324761 ~ 44334911 (+) False XLOC_003732
TCONS_00007203 other upstream 350214 44324761 ~ 44326292 (+) False XLOC_003732
TCONS_00007198 other upstream 651628 44024762 ~ 44024878 (+) True XLOC_003725
TCONS_00007223 other downstream 98817 44851474 ~ 44851593 (+) True XLOC_003747
TCONS_00007247 other downstream 635541 45388198 ~ 45393530 (+) False XLOC_003764
TCONS_00007249 other downstream 635553 45388210 ~ 45392663 (+) False XLOC_003764
TCONS_00007251 other downstream 639554 45392211 ~ 45394780 (+) False XLOC_003764

Expression Profile

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