RNA id: TCONS_00008714


Basic Information

Item Value
RNA id TCONS_00008714
length 2897
lncRNA type antisense_over
GC content 0.37
exon number 3
gene id XLOC_003748
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 44907969 ~ 44911219 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTCGCTTTAGTAATCAGCAGAAGTTTTCTATATTTATTCAATTAGGTTGAAACAACTTTTGAATCTGCAAACATGATTTAGTGGTAAAAAATTGGCAGCATTTCTACAGCTGAGAAAAACACTGAGGATCATAATAAACCACAGCACTCATACAGATACAGAGAAAAGCAGATTACATAGCCAAAATAAACAACCACTCACACATACAGAGAGAAGAGGAGATGACGTCCAGTAACTCCAGAGACATTCATGTCAGCAGCACAATAATAAACCATTTAAACTAAAGCCCAGTGCATTAATCCGTGAAGAAACACAAACAATGAAGCTCATTCAGACACGGAGATATAAATTTGGACTCTGAGGGGAATATTACAGCAGGATGacgattaataaactaataaatacacaACAAAGGCACAAGCGAAGGGCAAACGCACAAATACTACACCTGAATAATAGAGTTATCATCAACACTGAGGCTCTCGCATcctaaaggaacactccacctttATTGAGAATATTCCTATATCTTACAGCCTAGCTTCACCATTTGCTCATCATTCAGctgacttttagcttagcttagcatagatcattaaatcagattagactattagcttagcttagcacagaTCATCAAATCAGActattagcttagcatagataatttaATCAAAGTAGACCCTTATCTTAGCTTAGCCTAGactgaccgagtttggacacccctgcattagcTTGGCTTAGCACAAATCATTAAATAGGACTAGACTATTAGATTAGCATAGATCGAAGAATTGAATTAGACCATTAAATTAGTTTAGCATCGATCATTGAATCAAAAAATACCATTAGCTTAGCATTACATCGATCATCGAATCGGattagaccattagcttaGCAttgcatagatcattgaatcggattagatcaaTCGCATTAAAcctttagcttagtttagcatagatcattgaaatcAGATTAGAATAATAGCCtagcttagcataggtcattaaattagattaaaccaTTAGATCACCCTAGCAAAGACAATTGAATCCAATTATTCCATTAGCTTCTCATAGCTCagtgaattggattagaccattagcttcaGTTAACAGTTTATAGAATCAAAATAGACCCTTAGTTTAGCAAACATAACTGAATGGAATTAGACCATTATCTTAGATCACTGTCTCTGATTAGAtcattagcttagcatagatcattgagtATGATTAAACCATttgcttagcatagatcattgagtcTGATTAGACTTTTAGCTTATCATAGATCATTAAttttggattagaccattagcttagcatagatcattgaatctgattagataGCTTATCTTAACAGTTCATTGAATCAAAATAGAcccttagcttagcatagataactGGATCGGATTAGAATGAAAATGCATTGTTTACTTCAAGCACTGAAATCAGATTAGATCATTATCTTAGTTTAGATCATTGATTCGGATTAGActattagcttagcatagatcattgaatcggatttgaatcggattagaccaatagttttaataattttcagtGATCTATGCTATGATAACAaaatagtctaatctgattcaatcatCTATGCTAAGGTAattgtctaatctgattcaatgatctatgccaaGCTAACGATcgaatccgattcaatgatttatgctaagctaagggTTAAATCCagttcaatgatctatgctaagctaagctaatggtttaatctgattcaatgatctttgctaagctaagctaatggtctaatctgattaaatgatctatgctaagctaagggTCTAATCCAGTTCAATAGTCTATGCtaagctaatggtctaatcagattcaatgatctatgctaagctaatggtctaatctgattttatgatctatgctaagctaagctaatggtctaatatgatttaatgatttatgctaaccTAAGGGTCTAATCCagttcaataatctatgctaagctaatggtctaatcagattcaatgatctatgctaagctaagctaaaagtgctccagccagaGCCAGAgttcagctgaatggattcagaaatgCTAAAACTCTGCGGTTTAACTCTAGAGGATGTGAGAAATTAAATTATTCTCAATAATAGGGGCGTGTTTCACTAAAGCATCAGTAAACGAGTCTCTCTTTAATTGTGTGCTGGATAATACTAGTGTTTGTTGGCTCAGAGGTCTGGAGGGTTAATTTGGTTAAGGAGGATGAAGGCTTGCTAATGCTAGCGCTAGCTCTAAAAGCCCGTCTCGATGCTAAGGGTTCGACGGGTCACATGTTCGATCTCTCCGGTCACGTATTCGTCGAAACTGGTCTGATATTTGGCCAACATCTTCTGCATGGGCCGCAGGTTCAGCCACCACTGCTCCTTCGGCATCCTGTGCCTGGAACAGAAACAATACAAACTCTGATCAACAGTAATGATTACAACCTAATGACTGTGTTGATCATGTGATCTGATTGGTCGCTGTGTTGATCATGTGAATCAGTCAGTGTAGGTGTGGTCTGATTGGTCGCTGAGTTAATCATGTAAATCAGTCAGTGAAGGTGTGATCTGTTTGGCCGCTGAGTTGATCATGTGAATCAGTCAGTGAAGGTGTGATCTGATTGGCCGCTGAGTTGATCATGTGAAACGGTCAGTGAAGGTGTGATATGATTGGCCGCTGATTAGATCATGTGAATCAGTCAGTGAAGGTGTGATCTGATTGGCAGATGTGAATCAGTTAGTGAAGGTGTGATCTGATTGGCAGATGTGAATCAGTTAGTGAAGgtgtgatctgattggctaatgtgAACCAGTCAGTAAAGATGTGATCTGATTGGCCGATGTGAATCAGTCAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008712 lncRNA upstream 104689 44792503 ~ 44803305 (+) True XLOC_003745
TCONS_00008709 lncRNA upstream 155337 44676506 ~ 44752657 (+) False XLOC_003743
TCONS_00008710 lncRNA upstream 155337 44676533 ~ 44752657 (+) False XLOC_003743
TCONS_00008711 lncRNA upstream 213956 44676560 ~ 44694038 (+) True XLOC_003743
TCONS_00008435 lncRNA upstream 306056 44601299 ~ 44601938 (+) True XLOC_003741
TCONS_00008716 lncRNA downstream 224796 45136015 ~ 45143838 (+) False XLOC_003752
TCONS_00007227 lncRNA downstream 224833 45136052 ~ 45143840 (+) True XLOC_003752
TCONS_00008717 lncRNA downstream 301546 45212765 ~ 45219387 (+) True XLOC_003754
TCONS_00007232 lncRNA downstream 323261 45234480 ~ 45236734 (+) True XLOC_003757
TCONS_00008436 lncRNA downstream 420182 45331401 ~ 45335873 (+) True XLOC_003761
TCONS_00007222 mRNA upstream 52785 44804685 ~ 44855209 (+) True XLOC_003746
TCONS_00007221 mRNA upstream 181706 44723019 ~ 44726288 (+) True XLOC_003744
TCONS_00007220 mRNA upstream 272933 44622483 ~ 44635061 (+) True XLOC_003742
TCONS_00007219 mRNA upstream 274693 44622476 ~ 44633301 (+) False XLOC_003742
TCONS_00007218 mRNA upstream 275192 44622472 ~ 44632802 (+) False XLOC_003742
TCONS_00007224 mRNA downstream 21633 44932852 ~ 44936320 (+) True XLOC_003749
TCONS_00007225 mRNA downstream 181647 45092866 ~ 45107913 (+) True XLOC_003750
TCONS_00007226 mRNA downstream 199646 45110865 ~ 45126501 (+) True XLOC_003751
TCONS_00007228 mRNA downstream 241885 45153104 ~ 45158055 (+) False XLOC_003753
TCONS_00007229 mRNA downstream 241907 45153126 ~ 45158056 (+) True XLOC_003753
TCONS_00007223 other upstream 56401 44851474 ~ 44851593 (+) True XLOC_003747
TCONS_00007206 other upstream 572214 44335666 ~ 44335780 (+) True XLOC_003733
TCONS_00007205 other upstream 572672 44328774 ~ 44335322 (+) True XLOC_003732
TCONS_00007204 other upstream 573083 44324761 ~ 44334911 (+) False XLOC_003732
TCONS_00007203 other upstream 581702 44324761 ~ 44326292 (+) False XLOC_003732
TCONS_00007247 other downstream 476979 45388198 ~ 45393530 (+) False XLOC_003764
TCONS_00007249 other downstream 476991 45388210 ~ 45392663 (+) False XLOC_003764
TCONS_00007251 other downstream 480992 45392211 ~ 45394780 (+) False XLOC_003764

Expression Profile

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