RNA id: TCONS_00007225


Basic Information

Item Value
RNA id TCONS_00007225
length 4030
RNA type mRNA
GC content 0.47
exon number 12
gene id XLOC_003750
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 45092866 ~ 45107913 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtcaTTTTCCCGGGAACCTCCGCGCCACGTGACCCTCCGGGCGCCTCGTGTGCAACTCTCTTTTTCCAAATCAAAATGGCGGCGCCGCATGGCGTAAAACTGAAGGATTTAAAGTGTGATTTTACGGACACCACAGCGGCACAGCCTCCACAGGACGCTCAGGTGGATTTTGGAAAGCACGACCTCTTTGATCTGGACGTGGTGAAGATCTCTGATGCTCTCCATGGCAGTCTGGATCCCTCCATTCTGTCTATCTTCCAGGAGAAGACGAGTACGGAGAGTGTGGAGAGCGAGGCGTCTCTGCTGTGCGCGCTGACTGAGATCCTGGACAGTGTGGATGTGGAGTCGCTGTCTCCGTTCGACACGCTGCCGGACGCCGAGATATTCGCTGCGCACAAGAGTTCAGGCCACACGCTCAGGAATCTGCTTCATGCTCCAGAGCCGTCATCAAATCAACACCCAAAAAACCCACAATCAGCCGCTTCAAAGTCCAGAAGAGAGGTTGTGATATCAGACAGACAGCTGAGGCCCCGTCGCCATTCAGGATCCCAGATTGAGATTTCACAGCGAGACGACCATGAGAAAAATACGAAAAGCCATTCTACGAGAATCTTCCGGATCGAATCCGATGCAGTGTTCACAGAGGACAGACTGGAGCTGCTTGCAGAATTAGTGAGACACATGCACCCGTACTGCATGAAGATCTCCAGCGCGTCTACAGAGGACGACGAGGAGGAGTTTGTGGATGTGGAGGCTTACGAGGAACCGGAGGAGAACATTCTAGACCAATCAGAGCTCGGGAAAGAGTCCAAAGCAGAAAATGCATCGTCTTTTAAAGCTGAGGATCAGCATGAACACAAAGACCCAAACGCACGAAACACGAGTATAAAGAGCCCTGGAGAAGAAAGCATCATGTCTTCAGATCAAAATGTTGAGTTGACGATACAACACAGCGCTTTAGTCAAAACCAATGTAGCACAGatcaagaagaagaagaagacggtGACCTTTGCACTTAATTTAACCTCCGTGTATGAGATTCCAGCTTATAATGACGAGTCTGACTCTGATAAAGCAGAATCACCTGCTTTAGAGGAGGATGCTTCTAAAAATGATGCAACGTGTTCTACTAATGACATCACTGCTTTTAAAAGTGACATCACCTCTTCTAAAAATGACATCACTTCCCCTCAGAAGCCCAAAATGCTCAGTCTGCAGGAGTATCGTCTCCTCAGGCTGAAGAAGCGGCCGATGGAGCAGAGGCGGATGGACTATCGGACCAAATGGCCTTCGCTTCCCGACGTTCCCAGGGAACTTCcagatttgtttaaattcaacttgAAACCGAGTGGAAACGCTCATTCTGCCAAGAAATTAAAAGCAGCAAATGTGCAGACGTGTCAGTCCGAGCCAAAACATGTCAGACGTCCAGCCAGAACGCAAGTAGATCATTGTGTGGATCCTCCAAACCCAGTTTTAGTGCCGCTGAAGATCACTGATGAGCAGATTGAGGACAGAGATGCAACCCAAACTCCAGCAGAAGTGCAGAATTCAAAACCCGAGGTCGGGCTCTCTGAGGTCACACAGGTGAGCATCGAACCCAAATCTTCAGCTGCGGAATCAGAATTACCAGTACTGAAGCCTGACGCCGTCACAGAAGAGCAGACGCAGAACTCATGTGGAGAAATCGGAATTGAAGCTTCAGATCTGACCAGTCTTCTGGAGCAGTTCGAGACTCAAGCTTGTGATGCTCAGACGCTTCCAGAGGTTTCTCCGGATGAGTCTCAGTGTCGTCTGCCCGACCTCAGCAGCACTGCAGGTCTGACTCCTCCTGCAACTCCTCCACATCAGATCTGGAGGCCAAAAGGGACCAAACATGACCCCATTAAACCTTCATCCAGCAAAACCATTCAGATTATTGAACCCCGACCTCTGCCACCCAGTAAAACTCACTCTAAACCTCCACTGGCCACTGCGATAAACCCTCCTCAAGCGTTCCTGGATCACGATTACTGCGGGATGCAGGCACAAATAAACTCACCTTCGTGCAATTACAGGACGTTATCGGAGAGTCCGCGTCTGCCGGCATCAGTGCTGCTCTCTCCGGACAGCTCCCCCTGCAGGATGGAGACATTCGAGGAGGTGGAGTCTCTCAGGGGGCGGGGCTTGTGCTTTTCTACCCACTCTCCGAGCCCATTGGACCGTGGAAGACTGAAGAGGCGGAGATATGAAGGCAGATACCAACACTCCAGGTCCAGCTCCGGATCATCATGCTCTTCATCGTCGTCTTCATCATCGTCGTCTCGTTCCAGGTCTCGCTCTCCACCCacaaaaagGTACAGGTCCAGGCATTCTGGAAGCAGTTTGTCCTCGCGTTCGAGTTCAAGATCGTCTTCTCGTTCTCCGGTTCGCCAGTGTGGACGCCGCAGATCCAGATCACAAAACAGGTCCAGATCCTTGTGCCGATCGCATTCTGGTTCTCGTTCACCTGAGCCGGATTGCAGATGGCAGAGTCGTAGGCAGAAGGAGCTGAACCGACGACATGAAGaggctcgaaaactccggcagCAGAAAGCAATAGAGGAGCGTAGAGTGGTGTATGTGGGAGGAATCAGGGAAAGTATGGCACCTTCAGACCTCAAAGATCGATTCTCACTGTTCGGGAAGGTTGAGGATTGTACAGTTCATCTCAGGAGTCACGGAGACAACTATGGTTTTGTCACGTATTACAACACTGACGACGCTTACGCTGCTATTGAGAACGGCGGGAAACTGAGGCGTCCAGACGAGCTGCCCTTCGACATCTGCTTCGGCGGCAGACGACAGTTCTGTAAATCCAACTATGCAGATTTAGATTCCAACCGGGACGTTGATCCCGCATCCCGGAGCCGACTGGAGTCTTTTGACTTCGACACGCTGCTGAAACAGGCTCAGAGAGGACAGAAGAGGTAGCAGAGCTGGAGATGGACACATTAACGTTACCTCAGAGCCCTGATGTAAACCTTGTTGAAACATCACAGGAATGATGCACCTGCTGTGTTTTTGGATGTTCACCCCaaaagtaattcattcattcacccttCACAAACCCCTTTGAAAATttgtattctgttgaacacaaaagaagatgctttgaaaaatgttgttaaccggtaaccattgattaccatagtatttgtttttacctactatggaagtcaatggttaccagtttcaaaCATACaatggcccagtttcacaaacaaggcTTAGATTAAGCCAAGACTAAGGCTTTGTTAAATTAGGCTAAttaagccacatttataaaaataaccttagaatatattactggtgtgcacctggagaaAATAAAAgacactgacatattttaagCATCTCACTGCAAGTTATGTTGAGTTGAGACAGCtgaaacatgcaatttaatcttgactagccttaaacctcgTTTGTGAAACCGGCGATTTTTGTCCtgttatgtgttcaacagaaagtcaGATTTGGAACCATGTGAGGGTgaggaaatgtttatttttgggtgaactatcccaatatATTCAGTATTTTGTTGGTCATCCGTCATTATTACATTGGTCACATGCTACTAAACCCACTGTACAATTTAAGCAGGTTTAAAGGAGTATTCTGGGTGAAGTAGAAGTTAAGCTCTGTTGACAGTATCAGTGATCATTAAAACACAAATGCACTTATACTGGGAGTCTGTGGATCATTCTTGAGTTTAAGCAGGAATGCATACTTGtggtttttcagcagggttgatTGCACTTCACTAAACTGACTTCATTTTCACCTCTTTCTTACTTGACGGTTCTATTAAAGtacttttgtttatataattctgtacataaaaatgaaaaggcATTAAAGGAGTGAATTGTCATCATAGTTTAAATGGCAATTGGTTTGTTTTCTGTATATAACCTGCTTTTTTTGAGTGATACCAAAAATGTTTTCATCCTTTTTCAGTTGTAATGATGTTGCTTTACCTGAATAAAAAGATTTATGTACTAAA

Function

GO:

id name namespace
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0051091 positive regulation of DNA-binding transcription factor activity biological_process
GO:0005634 nucleus cellular_component
GO:0030374 nuclear receptor coactivator activity molecular_function
GO:0008134 transcription factor binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003712 transcription coregulator activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041008-203 Predicted to enable nuclear receptor coactivator activity. Predicted to be involved in positive regulation of DNA-binding transcription factor activity and positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDART00000163408

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008713 lncRNA upstream 181647 44907969 ~ 44911219 (+) False XLOC_003748
TCONS_00008714 lncRNA upstream 181647 44907994 ~ 44911219 (+) False XLOC_003748
TCONS_00008715 lncRNA upstream 181647 44908006 ~ 44911219 (+) True XLOC_003748
TCONS_00008712 lncRNA upstream 289561 44792503 ~ 44803305 (+) True XLOC_003745
TCONS_00008711 lncRNA upstream 398828 44676560 ~ 44694038 (+) True XLOC_003743
TCONS_00008716 lncRNA downstream 28102 45136015 ~ 45143838 (+) False XLOC_003752
TCONS_00007227 lncRNA downstream 28139 45136052 ~ 45143840 (+) True XLOC_003752
TCONS_00008717 lncRNA downstream 104852 45212765 ~ 45219387 (+) True XLOC_003754
TCONS_00007232 lncRNA downstream 126567 45234480 ~ 45236734 (+) True XLOC_003757
TCONS_00008436 lncRNA downstream 223488 45331401 ~ 45335873 (+) True XLOC_003761
TCONS_00007224 mRNA upstream 156546 44932852 ~ 44936320 (+) True XLOC_003749
TCONS_00007222 mRNA upstream 237657 44804685 ~ 44855209 (+) True XLOC_003746
TCONS_00007221 mRNA upstream 366578 44723019 ~ 44726288 (+) True XLOC_003744
TCONS_00007220 mRNA upstream 457805 44622483 ~ 44635061 (+) True XLOC_003742
TCONS_00007219 mRNA upstream 459565 44622476 ~ 44633301 (+) False XLOC_003742
TCONS_00007226 mRNA downstream 2952 45110865 ~ 45126501 (+) True XLOC_003751
TCONS_00007228 mRNA downstream 45191 45153104 ~ 45158055 (+) False XLOC_003753
TCONS_00007229 mRNA downstream 45213 45153126 ~ 45158056 (+) True XLOC_003753
TCONS_00007230 mRNA downstream 111645 45219558 ~ 45231199 (+) True XLOC_003755
TCONS_00007231 mRNA downstream 125435 45233348 ~ 45244641 (+) True XLOC_003756
TCONS_00007223 other upstream 241273 44851474 ~ 44851593 (+) True XLOC_003747
TCONS_00007206 other upstream 757086 44335666 ~ 44335780 (+) True XLOC_003733
TCONS_00007205 other upstream 757544 44328774 ~ 44335322 (+) True XLOC_003732
TCONS_00007204 other upstream 757955 44324761 ~ 44334911 (+) False XLOC_003732
TCONS_00007203 other upstream 766574 44324761 ~ 44326292 (+) False XLOC_003732
TCONS_00007247 other downstream 280285 45388198 ~ 45393530 (+) False XLOC_003764
TCONS_00007249 other downstream 280297 45388210 ~ 45392663 (+) False XLOC_003764
TCONS_00007251 other downstream 284298 45392211 ~ 45394780 (+) False XLOC_003764

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_00534481_00545134.mRNA True 3205 mRNA 0.51 14 CI01000306 534481 ~ 545321 (+)