RNA id: XM_034313415.1


Basic Information

Item Value
RNA id XM_034313415.1
length 5211
RNA type mRNA
GC content 0.49
exon number 29
gene id LOC113545202
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 9338448 ~ 9358512 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCACGCCGGCGCCAATCAGTAAACACTACTGCGTGCTCTTTATTGGATGCGCTTATAACTTTTCTGAAAGTTGCTAAACGTTTTCTAACACATGCTCTTGTTTATTTGGCTTTGCGAGTTACTACAAGATCTCATGAGATTATTTGCAAACACGGCTAATTGATATTGTGTGAAGTTTTGGTGAGGAGATCATGGAGGGCTCAACAATTAAAACCAGAATTAAAAATCTGCTGCGGTCGCCGTCTATAAAGCTGAAGAGGAACCGACGGCTGGACAAAGAAAACCTGACTAACAAGTTAACTCTGGAGAGAGTACTTGGCATCACGACTTCAGGAAGCAGTGGATTAACATGTGATCCTTGCTCTGGGACTGTTGCCTATCCTGCTGGGTGTGTAGTAGTGCTACTCAACCCTACAAAAAACAGACAGCAACACATAATCAACACTTCCAGGAAAACTATAACCGCATTAGCCTTTTCGTCAGATGGCAAATATCTTGTTACAGGAGAGTATGGTCATCTGCCTGCAGTGCGGGTTTGGGATGTGGCTGATGGCTCTCAGGTGGCAGAGCTACAGGAGCACAAGTATGGAGTGGCCTGTGTGGCCTTCTCTCCAAACAGCAAATACATTGTTAGCATTGGCTACCAGCATGACATGAGTGTCAACGTGTGGGCCTGGAAGAAAAACATGTTGGTGGCTGCTAACAAGGTGTCCAGTAAGGTGACAGCGGTGTCTTTTTCCGAGGACAGCTCCTACTTTGTGACAGCTGGGAACAGACATGTCAGATACTGGTACCTGGAACCCTGCAACTCCAACAAGCAGCTCACAGCCCCTGTTCCACTGCTTGGCCGTTCGGGCCTCTTGGGGGAGTTACAGAATAACAACTTCTGTGATGTTGCCTGTGGCCGTGGTGGGAAGTCTGAGAGTACTTTCTGCATCACTTCTTCAGGGCTGCTCTGTGAGTTCAACGAGAAGAGAATGCTGGATAAGTGGGTAGACCTGCGGACCAGTACAGCGAGTGCTCTTTTTGTCACTGAGGAGCTGATCTTCTGTGCGTGTGCTGACGGAACTGTGCGAGTGTTTAGCCCATCTGACCTGCACTTCATCTGCACCCTGCCTCGGCCTCATCACCTGGGTGTCGATGTATCTGCTGCCACACAGGCCAGTCACCTGTTCTCCAACAAACCAGATGCCCATTACCCCGACTCAGTAGCCGTGACCTATGACCCTGCTAACCTCTGGCTGTCGTGTGTATATAATGACCACAGCCTGTATGTGTGGGATGTTCGAGATTTGCAGAGAGTGGGAAAAGTATACTCTGGTCTCTACCACTCTGCCTGTGTGTGGGACGTGCAGATATACCCTGGAGCTAAAGAGGAACCTTTGACAGGGCTTACTTCTTCAGGGGTGTTCTTCAGCTGCTCTGCAGACAGCACAGTCCGCATGTGGAGCACAGAGCCACACATCAACCCAGCCAATAGCAATCTTCTCAGCAATGATCTTCGGAAGGTAATTTATACAGCAAGTAACAGTGCGTGCCTGCTGGACACTGAGGGAACAGGCACCAGCTGCACAGAGAAGCCAGAGGAGCAGCCTGCAGAGAGCCGAACGGGCATCAGAGCCATCTGTGTGAGTCCAGATGGCGAACATCTGGCCTCAGGAGACCGGAATGGCACACTAAGAATTCATGCGCTTAACACTATGGAGGAAGTTCTTAAGGTAGAGGTGCATGACTCGGAGATCCTGTGCCTGGAGTACTCCAAACCTGAAACAGGAATGAAACTATTGGCGACGGCGGGTCGAGATCGCCTGATTCATGTACTGGATGTTGAGGAAGACTACAGTCTACTGCAGACCCTGGACGAGCACTCCTCCTCCATCACAGCTGTCCGCTTCGCTGCTAATGAGGGGAAGGTGAGGATGATCAGCTGCGGAGCTGATAAGAGTGTGTACTTCCGCACTGCCCACAGGACTTTCAGAGGAGTAAAATTTAAACGCGCACACCATGTGGTGAGAAAGAGCACTCTTCATGACATGGATGTGGATCCCACCTGCAAGTATGCAGCTGTAGGCTGTCAGGACAGAAATGTCAGAGTGTTTAACATAAGCAGTGGGAAACAGAAAAAGTCCTTTAAGGGCTCTCAGGCTGAAGATGGCAGCCTTCTCAGGGTTCAGATGGACCCGTCTGGCCTGTATGTGGCCACCAGTTGCTCAGATAAGAATCTCAGCCTGTTTGATTTCCGAACTGGAGAATGTCTGGCTGCCATGTTTGGCCACTCAGAAATCATAACAGGCATTAAATTCACAAGTGACTGCAGGCATCTGATCTCAGCCTCAGGAGATAGCTGTATCTTTATATGGCGTCTTGCTCCTGAGTTGACCATTAACATGAGGGAGCGGCTTGATCAGTTCACGCACTGTCAGAGAGGCCCAGCTTTTGCAAAGTCAGTGATCAGACGGACCTCTACAAGCAGCCTGGAGATGCACAGCACCCTGTCTCTACTGACCTGCTCCTCCGAGAGTGAGGAAGATGATGACGAAGAAAGATTTGAGGATATTCAGACCCCAGATGACCATGATATGCACCAGACATCATTAGAAGAGGATCAGGGTGCTTCTGATGACACAAATGACTGGGACTCCTCTAAGTTCCAGGAGTCATCTACAGGTTCGTGTGTGTCTGAACAATCTTTGCCCGAGGTTCCACGCAGGAGAAAACGCTGGAACTGTAGGATGGGCTCTTTTGAGCTGATGGTGAAGTCCATGCTGGAACTTCGGCAGTTTGACTCAGTTTCTAAGCCTGGCTCTCCCTTAAGGGGCTCCACGGGTCAGCTCAGCAACCAGGCATGTAGCAGCACTGCCAGCCTGCACAAAGACACTAAACGGAGTAAGAAGCGGCAGGCTCGTCCTGACTCTTCCTGGTTGGGTCCTGCCTCGTCTCCTGAGCCAGAGGGTGTAGTGCTGAGCTCAGAACTGTGCCCAAGCACTGGCAGCTTGCCTGGAGCGTACCAGGTGCAGGAGGAGAAAGGCCAGTGCCAGGAGAGCCACAGCCCTGACAGAGGCAGCTCCATGGGCTATGCTAGTGGAGGATCCAGCCCAGAGCAGGCCCATGAAGGCTCAGATGATCCTGAGCCACTCAGCactgatgaggaggatgaggaggtggCAAGACGAAGGCCATTTCACAAGCCAGAGAGCCCTGAACAAGAGAGTTTCCTCAAGAAACACTTTGAGACACTGGCTGACACCAACAGCACGGGTAATGAACCCAAACCTCAAAGCAGCATTTCAGCATGCTTCCTTGCCCAAGGCTCCACCCCCAGgagGCATTCCCAATTCCTCTCCAAGACTGACAAGAAGTTTGAAAGATGTGGTGTATTCAAACCCCTGGTGTCTACAGTACATCCCTTGCAGAAGGACAACAGTCAGGGGGCGAAATTGGAGCAGAGAGCAGGCACATGCAGTTCAGAGCAGCTACACTCAGCCCCCAAGAGGAGGAAGACTTGCAGGGTGCAGAATGTGACCAGCCCAATAAGCATGTCCAGGGTGGTCAGCCCTGTAGACAAGCCACTTCTTAAATCCATGTCAGCACTCAGCCTAACAGCAAACAgtcgAAAATGTGTAACTACTTCCCTTTTGAAGCAAGCATCTCGACCTTCCACACCCGAGCTTCTCGCAGACAGGAATGATTCAATTTTACGGCACCCGTCTCCCACAGACTCGCCATCTCCCCAGCCGTGGGAAAGCCCAAACACTATCCGACGTCTCAAAGTTCGCTCATACATGAGTCCCACCACCAGCTCGAGAGCCAAAGTCAGCCGCTCCATGTCCCTCAAAGAAGGTCTTCATCTGAACCTGTCCAGTGGTCAGACATCTCCATGCCCAGGGTCGTCCCCTACCAGTCCATCTCGTGCCAGCACGGCTCTTTTGCCATCTCTATCTGCCCCTTTCCCTGATCCATGCAACCCAGCTGAATCAAAATTGAGCCATGGTGGATGTCCTCCAAACCCAACTGCTAAAATCACCAAGGCCCGTGTCTCGGCAAGAATGAGTAACCCTCTGTCTGAGTATCCCAGCAGGTCCACACCTACTCCCAGTACAGACTCTCCTGCCGTCACAAACACTTTTGCTAAGACTGGAGTTCAGCACGGAGATAAATGCTATACAAAGGGTCAGGTGGAACCTACAAAGTCTATGTTCCCCATCCCCGTCTCTCAGTCTGTAAAAGACTCACTGGGCCCTAAATCTTCATCCCACACCCCACACCACCCCCTAGTGGATGTCCAGGCCTACAGCGTGACATGCAAGAGCCAGTCTGATCAAGAGCCCTTGATGAACCTGGAGACTTGCAGACAGGCTGCTGCAGAGCTGTACAACAGCGTGAAGAAGGCCACTCAGCTCTACATGATGGTGAGCTCCTGTGTTGGAAATGTGGGTTCGGAGCAGCAGGAGATGGAGTGTGTGCTGATGGAGGCGTTGTACACAGCACGTTCTGAGCTGGAGGCTGTTCCGGGACTCACTCCTGTGTCAGGGCCGACTGTACTCGGTGAAGGTGAAGAGAAGACACTGGCCCTGCTGGAGCAGTTCTCTCAGCTTCTACTGCAATCTGTAGAGAAGAGACTCGAGCACAAAATCTAGTCTCAAAATCTATAAGAGTCTAATatcctgacctcattaatgtaGTAGTGAAGATATATGCACTGGATTATGCACTGTACATCTAACCAGAAAGGAGACATGAGGAGTGAAGAGAGCAAATCAGACAGTGTTTCACAGATTTTAACTGTCAACATTTTATaccaagaattttttttttttttttttagattttagtgTTCATTCTTTCTGAGCACTACCCAAAGAATGAACAATCAAGTTTTATAGTGTGTTTTGACATGAGAGGTTTATGCAAGTATATAATTTAATGTACATGTGTTTGTTTACTAAGTATATGCATTTACGTGTTTTAAATACATGCTggaattatattttttattttaataaagttttaaacaTCATACATACCCCACATACTATACAAGATTCAAAAGGGAGAACGCTGAGAGCACAAGATGAGGCCTTAAGTGTTTTTAACTAGAGGGTGAGTTTGTGATTATTGACATGTTTCTGGTTGTGACTTCTGTACCACAGGTTCCATTTCACTTGCTGTTGCTAatgttcttaaaataaaatgagaagtAGTTAAACACTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU346602 lncRNA downstream 83200 9222016 ~ 9255248 (-) True G292573
TU346232 lncRNA downstream 701123 8636495 ~ 8637325 (-) True G292231
TU346065 lncRNA downstream 777719 8560507 ~ 8560729 (-) True G292076
TU346044 lncRNA downstream 779592 8558351 ~ 8558856 (-) True G292056
TU345996 lncRNA downstream 871431 8466809 ~ 8467017 (-) True G292009
TU346778 lncRNA upstream 48937 9407449 ~ 9407913 (-) True G292695
TU346782 lncRNA upstream 51731 9410243 ~ 9415603 (-) True G292697
TU346786 lncRNA upstream 57879 9416391 ~ 9416590 (-) True G292701
TU346921 lncRNA upstream 254031 9612543 ~ 9612781 (-) True G292807
TU346936 lncRNA upstream 309203 9667715 ~ 9669849 (-) True G292821
XM_026944624.2 mRNA downstream 10940 9265874 ~ 9327508 (-) False pak7
XM_034313863.1 mRNA downstream 11824 9265874 ~ 9326624 (-) False pak7
XM_034313862.1 mRNA downstream 34393 9265874 ~ 9304055 (-) False pak7
XM_026944626.2 mRNA downstream 34712 9265874 ~ 9303736 (-) False pak7
XM_026944623.2 mRNA downstream 34712 9265874 ~ 9303736 (-) True pak7
XM_026944493.2 mRNA upstream 2514 9361026 ~ 9381776 (-) False magl
XM_026944494.2 mRNA upstream 2514 9361026 ~ 9381776 (-) False magl
XM_026944492.2 mRNA upstream 2514 9361026 ~ 9381776 (-) False magl
XM_026944499.2 mRNA upstream 2514 9361026 ~ 9381776 (-) False magl
XM_034313734.1 mRNA upstream 2514 9361026 ~ 9381776 (-) False magl
trnae-cuc_39 other downstream 137337 9201040 ~ 9201111 (-) True trnae-cuc_39
TU346069 other downstream 740305 8584217 ~ 8598143 (-) False fkbp1b
XR_004580143.1 other downstream 1670662 7665134 ~ 7667786 (-) False six6b
XR_004580142.1 other downstream 1670662 7665134 ~ 7667786 (-) False six6b
XR_004580140.1 other downstream 1817607 7505961 ~ 7520841 (-) False ppp2r5ea
TU346830 other upstream 129706 9488218 ~ 9491222 (-) True LOC113545281
XR_004580169.1 other upstream 150191 9508703 ~ 9516177 (-) False znf410
TU347081 other upstream 395987 9754499 ~ 9760663 (-) False lrfn2b
XR_003404605.1 other upstream 484857 9843369 ~ 9843472 (-) True LOC113545371
XR_003403344.1 other upstream 1191375 10549887 ~ 10550026 (-) True LOC113532436

Expression Profile