RNA id: XM_026944492.2


Basic Information

Item Value
RNA id XM_026944492.2
length 8961
RNA type mRNA
GC content 0.44
exon number 25
gene id magl
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 9361026 ~ 9381776 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGTTGACATGATGCACGGTACAGTTCGGTATTGAGAAACAATGAAGCCAAACCACGGCGAAGGAGCTCGGGGAGCACTTTCAGCATGTATGCATTGCTGACCATGAAAGGCAAGTGGGCTGTAGGTGAAACGCGCGCGATTAGAAAAACTCATGGCCATGAACTGCATGCGCGCTGTTGCATTTCTGATGCGTGTCTAAACCGCGCGACAGACGAACTCCCGCCTCGACTCGGACTTGTGCATGAATCACGCGCCATCGTGGTTGTGGCGCATGCGCAGTGGGTCTCTTCAGCGCCCGTGTGCTTTAGCTGCGAACAAGCCACCATTGGTGAGTTGGGGGTCTTCGTCGAAGTTGTCCAGCTTTGCTCAGCTCGCACGGATGCCCAGCACACAAAGTCTGGCTCCAGGGTAAGAGAATCAGACTGCCCTTTAAAGGATTGACTGTGGCCTAATATTGCTTGCACCATGGAGGGTGGAACTGAACAGAGATTGAAAGAAAAGGCTTGTCTAGTCTCTACTCCACACTCAGTGCCTGTGGTTTTGAAGCCAGGCAAAAGTGATGAGTGTGGCAACAACCAGGCAAACCAGCAAGTCACCTTGTCCCCTGTTACACTTACTAAAAGCTCTACCCAGGAAAGTCACACAAGCAGTGACATTAAAGTTATTCTGGAGAATGAATCGGTTTGGAGTCGGTTTCACAGCTTGGGCACAGAGATGATCCTCACGAAGCAAGGCCGGCGCATGTTCCCCTGCTGTCGCTTTAGACTGAGTGGATTAGATCTGCAAAGGAAGTACTTTCTGGTTATGGATATCATGGCTTTAGATGATTTTACCCACAAATGGAATGGAAAGACATGGGAGCCTGTCGCAGTGGATGAGCCACATGTGCTGGGACAGTTATGCGTCCACCCAGATTCCCCAGCCCTGGGCCAGCAGTGGATGGATAGCCCCGTGTCCTTTTACAAGGTGAAGCTAACCAATGACTCCACGGACCAAGAGGGCTGTGTGCTTTTGCATCCAATGCACCGCTACCTACCACGACTGCATGTTGTTCCTGTGAATCCAGATTCAGAACGGACTATTGCACTTGATAGTCCAGATGTCAAGGTATTCAGTTTCCCCCAAACAGAGTTTTATGCAGTCACCAGCTACCAGAACCCCCAGATCACCCAGCTTAAAATTGACTGTAACCCTTTTGCAATGGCCTTCAGAGAAGACAGCCAGAGCATTCGTCTTCTTCAAGACAAACTCAGGCTCTGCTCTTCTGCTGGTACACCCTTCCGATCTCCTTTTCTAAGTTTGGCCCAGAATCTTAGTGGAAAACAGAAAGAGGGTGCAGTAAAGAGCACAGCCTCAACCTGTATTCAAGACAAGAGaATAAGAGGTCTTTATCCAGGATCAACATCTCTTAAAGAAGGAGAGGGGATCTTTACTAAAATGAGAAATGCAACTTTAAGTTGCCCAAATAATATGACTTTGTGCCAAGAGAATACTGATTGCAGTGAGAATGATAGAGGAGATGAAGCTGTTGTGAATCAACGTCCAGCAGAAACTGTGCTGGATGAGCATGTAACACCTTTGGGTTTTGAACCAAGTGTAACTGTGTCTTTAGAAGAACGCTTGTCAAGCACTGGTGAACCAGTTCCTCCCATAAGCAGCACTGAAAATCCAAGATGTTCTGAGGCTTCTGCTGTTAATTCTCAAATAAGCTGCACAAACAGTGAATCACCTACAAAATCAACCATGGCTGCTCAGAGTCCTGAGACTCAGGAGGAAATGAAGTCCCTGCCCAGACCACATTCCCTTAATGGTAGTCAAGTACACGAGCGTAAACCAGGCTGTCTGTATAGACGTAGACATTATCGGAGGGGGAGAAAAGCTAAATCTAAATGGTGGTCTAATGTGAAGTATGCAAAACCCCCTCCTGCAGTTGTGCCGCTTAATGTTCCTTTGCAACCGGACCTTGAAGATGTGGAGGGAATGTTGTTTGTATCTTTTGTCGCAAAGGAAGCCTTAAATATTCATGTTGAAAACATAAAAGAAAGTGAAACATCTCTGCCTCCACCATCTCCAACACATAACCAGTCAGATATTCATGAAGCTGCAGCTGTCAGTCTGTCTATGGAGGAAAGAATTGCCAAATTGGAGAAAATTTTACTCCTTCATCTAAAACAGCAAAAGCACAGACAGGTCATTCACCCACGCCTACAAGACGttGGCATGAAGTTAAGCCTTCTGGATCCAAAGTTACCTATAGACTTGCAGTACCTTGGTGTGCACTTGCCCCTTCCCCCACCTATTCACGAGGGTTTGGATAAAATGAATCCCACAAGCCTGTCGTCCTCTCCTGATGCAGCTGGATTTTTTGTGTCACGGACTGGCAAGACAAATGATCCCACAAAGATAAAAGGCTGGAGAGATAAGTTTAAAACCAACACAGTACAGAATGCACCTGAAGGCCTGAAAAACAGTTCAGCATTCTGTAGTGAAATGCTGGATGCGTATCTCGAAAACGAGGCCCAGCAGATTAGCGATCGTGTTGCCGTGTTTTCCAAATGCTCTACATCACCAGTATCATACCAGCTACCTTCGAAGAGCAGCAGTTATGTGGTTACCCTGGATAGTCTACTTAAGTCTCGATCTGTTTCATCAAACAAGGTCTGCACCAAACCAACGGACAAAATCCTGCCCAAATCTCCACTTAGAAGATCTTCAAGTGCTGCTGTACCTTTGTCTTCAGCAGGATTTCAAAATAGATTTCAAGGAAACCAGGAGAAAGGGAGTAAATTTGCACGTTCGTTTCAAGCACATCAACATGCAGTGTCTACAGTTCAAGCCAGCAGATCCATGAGCTTTGTTTCTAGACCTGGTATGAAGAAACAACCTGGCAAGTCTCAGCTGAAATGGATCCCTGTAAAAGCCAAAAAACAGATGATGCTTCaggagatggaggaagaggCAATCTTTCATGGCAAAGTTCGTACACACATCACTACCGAAAGAGCAAAATTTGCTCTTACTTCTCTGCTTAATTTCCAGAAACCGGGTAAAAGGCCTAGGTTCCGCAAACACCATAAAGATGAGAATGCATGTCCTGAGGATTTCTGTCGTTTGGGCTGCATGTGTGATAGCTTGGACAGGGAAATCCGAGGGCCTACCCACTGTCGGAGAGTTGAGTGCATGTTTGACTGCAACTGTTTCAAGCACAAAGTTCTTCTGCTCCACCCTCCAAAAGAGACAGCAAATGTTCAGAGGGGCAGGAAGAGATCAGTACTGGCTTTTCCTATTGCAGACCCAGAGAGGGAACCCAGACCACCACCTGCAGCCAGTATCACCACTTTATGGAAAAGGATTGCAGGAGAACATGATCCTGAACCATTATTTATTCCTGAGCCTTCGCTTTCTTCTAAAACTGTGTCTCGTTTACGTACCAGTCTTTACCATTCCACTAGTCAGGTGCGGGAGGAAGATAAAGATCCTGTGTATCTGTATTTTGAGAGCATGATGACATGTGCTCGTGTGAGAGAGTACAACAGTAATCCACCACCTCAGATACACATGTTTCCTACcaaaaaacaaatgacagaACCTGAACAGCTTaaTGAAACTGCCAAAGCAGGTGAACCACCTTCCTCTCACAAAATACCAGAGACAAATCCCACAGAGCCTCCGCTAAAGCCAGGTGAGCCTAAGCCCACTAAACTGCTGGAAATCCTGTCTGAGTGTAACTGGGAGCCTCATCGGAGTTTGGTGCTGAGCGCACTGTTCCGGCGCATGAACAGCAACCTCCTCTCTGAGCCTTTCTGCTTTGGCATGTACAAAATACAGCTTCTTTCTACTACCGTCAAAGGAGTAGACAGGTCCTCTACAATTACTTACAAGGTATGCATCTCCCGGGCGGATGAAAAAGAGATGACCGAAGATTTGCAGCCACCAGTGAAGAAGGCAGTGAGAAACCAAAATTTAAAAGGTTTTGAAACCAAAGTATTCAAAGCCAATGAAACACAAGCTCAGAAAGCAACAACTGACACTGATTCTGGGCGAAAGAGTAGCACCTTGGtggaaaagcaacaaaaaaagccAATCTATAAGAGAGTATTAAGGGCTTTGCCTTTCCTCACTCATGCTGCTCCTGTTGGTTGTCTCAAGGCAGATAAAAAGAAACCAGGAAGCCTTTCTCAAGGTCTAGTTAAGGTAAATGGGAAAACATACACTCAAGCAAAACTCCTGTTGGGCCAACTGGGAGCATTACATCCAGTGAATCGCTTTGCAGCTTTTGTCACTGGCAGGCTACTGCCTATACTTAGAGATCAATCTAAAATTGAGGTTGATACCACCAAAGCGTGTCCTTCCAAAGCCCCTCTCGAGCCAAGCTCTGTAACCGAAGTGGCAAATGTTTCAAATCAAACTCCTTCAAATCTTGCTGTAGCCAGACCTCCTTTAGCTAATGCACCTGAACCTAACACCGCTTCCAAAAACAGAAGATCAAACATAAGTCCCTTGAATGCCCTTTCAAATCTTGTGGGCCCATCCCCTGGCACAACCCCCATTGTGCCTGATGGCTCCAGATTTGTTCTTGTGCCAGTAACACCTTCCAACTCTGCAGCTGCTCCTTCAGCAGAAACTGTTACTAGTTCCACCCTCCCACCTGGCCAGCAAGTGGTTCTGCAGCCTGCGCCAGGAATGCCAGGGTCGAACTTTTTATGTCAGTACAATGGCCAAATGATCCAACTAAAGCCCATCAGCCCTGGGCCCCTTGTTGAGCCACAGTCCAGTTCTGTCAGTGAAGGTAGCACTTCACAGGTTGTGCAAACACCTTATAATACAGGTCTGCCAAAAGACACCAGATCTGTTCAGAGGCCTTTGAACTCtactcctcctttgccagtcaTTGCACCCAAAGTGCTTTCTCTGTCAGCAACGAGTGGCATGAACATTGCCAATGGCATGCCAGCTTTTAATTTACACTCAAGTTTTCTGGGTAAAACAGGGACATTCTCTTTTCGAATATGTCCCCCTACTAGCGAGGGGAAGCCTGTAGGTTCAGAGCATGGTAGTAAGCCTCCTGAACCTTCTGTTGACAGTTCTTCTACTTTGGCACTTCCTGGAGGTTTCACCTTGATAAAACTCTTTCCCCCTGCTGTGTCAGCTGTTTCTGCAAATGTCACCTCAGCTGCTTGTCATCCTGCTGAAATCCCACAGAATGATGAAAGTATGAAGAAATCTATCTTACAGAGTTGCTCCCCCAACCTTGAACAAAATTGTCAAGCCTCAGACAGCATTACCAAACCACTTCTTCCCGGAACATCAAATTTGAACTCTGCACAGGGGGCTACAGCTGACTCAAAAGGTGTTATTAAAGATGAGCCTGTGGAACATTCCTCTGAGTCAGTAAATACATTGACTCCAGGCAAGTATGACTGGGTACCTGAAGGTGCTGAGATGGTACACACAAGTGATGTGAGTGAATTGGAACCTAGGGACATGGATGACTGGCCACCCAAGGGAGCAGAGCGAATTTTGTGGATAGACTCTgcagatgaagaagaaaatgaagattTGAATAAAGAGCTGAATAAGAATTTGGATGTTGCTGCTGGAAGCCCAGCTACAGAGGAAGCCAGTGAATTAGAGACAACAAAAGGAACTGTTAAAGCTGACTTCAGTAGTTGTGATGAATGTCTTCCTGTAGATAAACTGCACTTCAATGAAAAAGAGACTCCAAAAACCCCCCACATTCATGAAAATGGTTTGCCACCTGAAGAAGGTGTATGTTTGAAAAGCTCTTATACCGATGAACATAAACAACATCTGAAGTCTAGCATGCCAAATAATGACCAAGAAAAAGTCTGTGAtccatttttaaatgcagctaACTCCAACCCTACAAATAGTAGCAAACAAGGGCCACCTAATATCAGAGAACAAGTTATGATTCAAGAAAATTGTCCCCCTGgtctcattaaaaatgagccATATAATGAACCAACAGAGACGGACATGGCTGGTAATGAGTCTGACATCAAGAACCAAGGTCGTCTACCTGAAAATAGCACTTTACACATCAGTAAATTAGAAACTTACAACAGTCAAACAGGGGAGAATACACTTCTCAACCACTTTCTTATCAGGGAACAAAGGCTTGGCTCTGCTAATAATTACGATGTTTCTATTAAAATAGAATCATGCAGTGACTCACCCAAGACAGACTTTTGCTCCATgaatgatgatgtcactaaacaGCATATTGGCTCAGAGAATATTTTACCACTTATCAATAAAGAAGAAGAGCCCAGTATGAATCAAACAGTGACAGAATTTTCCAGTGACCCAAGTAAGCAAAGTTTGGGCTCTGAGATTAGTTCTCAAATTCTCAATCATAAGGAATTTTATAATAATCCAGCCAGACCCAACACCACGGCTTCACTGCATGCTGAAGACAGTCATGAGAATGTTGACATTGCTGGTAATGCTCCATGCTCTTTACTGGATGGTCAGACACCTGTGATGAACTCCCCACCTACAGCACATCTGCTAAACACAGCCTCTTTGGGTCAGAAAACTGGCCCAAAAAAGGTTTCACTTTTTCCTCATAATATGCATAAATCATCCCCTGAGCTTTCAGATAATTTTAAGACATCCAGACTAGTTAAACAGGATTTAGAAGAGGGAAAAGATGAAGCGGAGGATAGGAACAAGCAGCTTAAGTCTAAGACAGCAGTGGAAGAGCTGTATGGTGATGAAGAGATTGTTGTGGATGTGATGAACCTGAGTGAAGATGAAGATCCAAGTGACGAGTTTGACAGAGATGAAGACAATTCAAGTGATGATGGCGAGGGGGACTCAAATAGTGATGAAGAGGATTCCAGTAATGACTCCACTAGTGACAGTGAAACAAGTGCAGACATGTCTAATGAAGATGATGTTGACGTTGAGACGTTTGAGGAAAATGATGGAAAGATGATGATAAACATGATAAAAGATAAAACCAGGCATAAAAAGAATGCAAAGAGAGGAGCTAAATTgagaaaaaagatgaaGCATCTCCCAAGCATTATTAGCATAGCAGAATACCTGCCAACGCATGAGCTAGAAAAACGGCTAATTCACACTGAAAAAGAGCGTGTTCGCAGAGATGAAATGCGTCAGTCCTTTGCTGCACTGAAAAAAGCACTAAATGTTGAGGAACGAGTCAAAATGTGCAAGGATGACATTCTAAATCAGGCTCGACTTATGATTCGGGCTCTTGAGGACCGGAGCCAGTGTTTAGAGGAGAGGAAAAATGACCTACTTCAGAGACAGTCTGCCTATCTCAGCAAGATTTTAGAATTATCTGCAAATACAGAGGCTAGAGACAAGGAAAGTTTTGAGGAAAACTGTGAACATCAACAGCGATTTGGGTCCAAAAACACTCTGCAAACCTCAGTTCTAGGTCCTCTAGTAAACCCTCGACGGCTAGACAGTGACGGCAACAGACTCCCACCTCGTCTTGGACGCTGGAAAGCCCCTAATTATATACGCAAAAGATCCAGAAAGGCGTTACGACAGCCTTCTATTACCACCACAGTGGCTGCGGATGAGAGTGTAGACTTACATTTAAGTCCAGATACACCAGGCAACCACACTGTGAGTGAACCCTTGCCCTCGGTTAAAACAGagGACCTAGTGCGGTCACTAATTGCACAGAACCCCACTGGTCTACCTCCAGTATGCAAAACCCCTCAACAGAAAAGTCTTTCAACAGAGCCCAAGCCACCAGAAAAGCGTTCATTGCCGAAGATCGTGTTGCAGTCTTTCGGCAAGACTGACGCCGTAAAGCTCACACATGACGTAAGAACATCTCTACCAAGTTCTGCTGAAGTCTCTAACTCTGCTCAACTGTTAACGGATGGTAATTTGGATCTGCAAGACCAAAACAAGGGATTGGAAAAATGCGATGCAACAAGAGTCTCTGATGAGATGGAGAAAACTCTAGTATCAGGGCACTCAAACAAAGAGAGCCCAACTCCATCCTCAGCAGTCACCGAGAGTGATGTCCAAAATAACACTTTGTCCGAGTTGGAAAAGGACGAACAATCCTCTGCAGCTGTGGtgaaagtgaggaaaaaaaggggaaagTCTGAAGTGGTCATAGAAGAGGCCTTATCCAACCCTGATGTCTTAGGACCCAGGCAGCTAAGGCAAAGATCCCCTGCAGTTAATGGAGGGGCCACAAGGGGAGGCTCAGCAAATAAAAGGAGGAGGATTATTTAGATGTGTTGTAGTGGCTCGTGAATTTTCTCACACTCCAGCATCTCAGTTTTGTCTGTTAATAATGCAGTTTTGACTTTTCTGGTTTTGATTTCCGAGGCTACAGAAGATTTGAAAGAAACTGTAGTTCTCTAAATTTCTCCATATGCACCTGCACAGAAATCAAGGACACAGAGGAGGACAGCTGCACCTCTCATTTGATGGTTGCATCCAGTCTGTTAGGCGTGactgcttttcctttttttttttgtgcctctTCAGGGtactgtaaatacagtatacacttGTGCTCATCCTGAGGATTGTCAAGAATACTATATCATTTGaaagaaacattaaattaatgtaTGAATATTACCGGTGATCGTTTCCTGATAGACCCATATTGGGGTAAAGTTACTAATATGCTTTTCATTTTGGTACATTCATGTTACATGGCAGTTCATGAATTCATATTTTGCTAATAAGGGTTTCATATGTAAGAAAAGAATGGATTCACTCATTGTATGTATATGACATTTTttcaatcatgtttttttttttactgattattCTCTTGGGTCTAATTAATTATTGCTCAATACCTTTGGCTGTATAAATGCCACATGGTCAATGGATTGTGAGGGAATAACTGCTGTCTGCAGTATAGTATAAAGGAATATAGATGTGTAAAAATGACTTATTAAATATATGCCATTCTTTTATTAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU346602 lncRNA downstream 105778 9222016 ~ 9255248 (-) True G292573
TU346232 lncRNA downstream 723701 8636495 ~ 8637325 (-) True G292231
TU346065 lncRNA downstream 800297 8560507 ~ 8560729 (-) True G292076
TU346044 lncRNA downstream 802170 8558351 ~ 8558856 (-) True G292056
TU345996 lncRNA downstream 894009 8466809 ~ 8467017 (-) True G292009
TU346778 lncRNA upstream 25673 9407449 ~ 9407913 (-) True G292695
TU346782 lncRNA upstream 28467 9410243 ~ 9415603 (-) True G292697
TU346786 lncRNA upstream 34615 9416391 ~ 9416590 (-) True G292701
TU346921 lncRNA upstream 230767 9612543 ~ 9612781 (-) True G292807
TU346936 lncRNA upstream 285939 9667715 ~ 9669849 (-) True G292821
XM_026944405.2 mRNA downstream 2514 9338448 ~ 9358512 (-) False LOC113545202
XM_034313416.1 mRNA downstream 2514 9338448 ~ 9358512 (-) False LOC113545202
XM_034313415.1 mRNA downstream 2514 9338448 ~ 9358512 (-) False LOC113545202
XM_034313414.1 mRNA downstream 2514 9338448 ~ 9358512 (-) True LOC113545202
XM_034313417.1 mRNA downstream 3402 9338448 ~ 9357624 (-) False LOC113545202
XM_026944521.2 mRNA upstream 99380 9481156 ~ 9487673 (-) True lrfn5b
XM_026944550.2 mRNA upstream 107228 9489004 ~ 9491270 (-) False LOC113545281
XM_026944548.2 mRNA upstream 107228 9489004 ~ 9491217 (-) False LOC113545281
XM_026944526.2 mRNA upstream 126805 9508581 ~ 9516177 (-) False znf410
XM_026944527.2 mRNA upstream 126817 9508593 ~ 9516153 (-) True znf410
trnae-cuc_39 other downstream 159915 9201040 ~ 9201111 (-) True trnae-cuc_39
TU346069 other downstream 762883 8584217 ~ 8598143 (-) False fkbp1b
XR_004580143.1 other downstream 1693240 7665134 ~ 7667786 (-) False six6b
XR_004580142.1 other downstream 1693240 7665134 ~ 7667786 (-) False six6b
XR_004580140.1 other downstream 1840185 7505961 ~ 7520841 (-) False ppp2r5ea
TU346830 other upstream 106442 9488218 ~ 9491222 (-) True LOC113545281
XR_004580169.1 other upstream 126927 9508703 ~ 9516177 (-) False znf410
TU347081 other upstream 372723 9754499 ~ 9760663 (-) False lrfn2b
XR_003404605.1 other upstream 461593 9843369 ~ 9843472 (-) True LOC113545371
XR_003403344.1 other upstream 1168111 10549887 ~ 10550026 (-) True LOC113532436

Expression Profile