RNA id: XM_026940390.2


Basic Information

Item Value
RNA id XM_026940390.2
length 3232
RNA type mRNA
GC content 0.40
exon number 12
gene id erlin1
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 12945709 ~ 12956916 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAGGACTTTTAATTTGAGATTACGCGCTCCTCCCGCTTGCTGAGTTGTTGATGTTGCTTCACAGGAGTGGGAGAGGCATGTCTGCATTTCAGCTAAAGTGAAATGCTCTTCACTGTTCCTTGACTGGCGAATGACAGCAGGTGAGGGCCGGGAAGAAGGATGACAATGGCGCATGTTGGTGCAGTGGTTGCTGCGATCACTGCTGTGATGGCCATTCTGCTTCACTCCTCCATACACAAGATTGAAGAAGGCCATTTAGCAGTTTATTACAGAGGTGGGGCTTTGCTCACCACTCCTAATGGCCCAGGCTATCACATCATGCTGCCTTTCATCACCACCTACAGATCAGTGCAGACGACACTGCaaacagatgaaataaaaaatgtgccTTGTGGAACAAGTGGTGGTGTCATGATCTATTTTGATAGAATCGAGGTGGTCAACATGCTGGTGCCATTAGCAGTGGTGGACATCGTGAGGAATTACACTGCAGATTATGACAAGACACTAATATTCAACAAAATCCACCATGAGCTGAATCAGTTCTGCAGTGTTCACACACTGCAAGAAGTCTACATTGAGCTGTTTGATATAATTGATGAAAACCTTAAGACTGCTCTGCAGAAGGATCTGAATTCCATGGCCCCGGGTCTCACTATCCAGGCAGTACGTGTCACCAAGCCTAAAATCCCTGAGGCAATCAGGAGAAACTTTGAGCTGATGGAAGCTGAAAAGACCAGACTACTGATCACAGCTCAGACCCAGAAAGTTGTGGAGAAGGaggcagagactgagagaaagaaagctatcATTGAGGCTCAAAAAGTGGCTCAAGTGGCTGAGATCCAGTTCAAGCAGAAAATCATGGAaaaggagacagagaaaaagatatCTGAAATAGAAGATGCTGCGTTCATGGCCAGAGAGAAAGCTAAAGCAGATGCTGAGTTCTACACAGCGGCGAAGTTTGCTGAAGCCAATAGGCTGAAGCTGACACCAGAGTATCTGGAGCTCATGAAATATCAGGCCATTGCTGCCAACAGCAAGATCTACTTTGGCCAAGACATTCCCAACATGTTTGTTGACAACAGTGCCTCTCCCTCATCCAGAGGGGCTGACTCATCGGAGCAGCTGGAGTCTTTAACCCAAGCTGAGAAACCCAGGAAAGTAACTAGGCTAAAAGCAGATGCAGAGCGCCACTGAGAGGCCCGTCCAAGGCTTCTTCTCTGTCGTTGTCTGTCTCTCGGGGGCTGGAAATGCTTGCGTGGCATGATGGCATAGATACGTTTCTGCTGAGAGCTCTAAACTAACTGTGCAGTTAGTCATCCGACTTGAGGGCACTGTTCAACAAAGAGGCTGTGTTTTACTATCACATGCCTTTGGTCTGGGGTAGGGCTCAAATGAGACTAAGATCTGTAAAGTGCGCTAATGAATCAGCGATGCTGCTGTGATCACACAGCATGCATTTCCCACCTTTACTTCCTTTTGTCCTTTTGTGTTATTTGCAGATTGATATGTGAAAAATTTGCATCTTGACAAATTTTGTGTTTGCATAACTGGAATTATAAGGCTTCATGCTAATTGAGACGGGGAAAATAGATTATGCAGCTacaagagattttttttgtgaaaagttAGCTTGTGTCTTTCATAACGCGGTCATAACACTGAGGTCTTAAAGTAAAGCCCCACTTAGTGTAAAAAACCAGTCATAAACACCTTCAGTGTGACTATAGCCCCATGTTAAACACAGTTAGACGGTGTTCTTCAGTGAATTGATATTGCGTTGAAATGATGTGTACAGTTTACATTTGATTTAGTTGGTTCTGTGAATGATTGATTGTTTTCACCTGTTTTGTAAATTGGGAATTCACAGATTGGTGTAAACCTAGTATAGTACTTGGCTTTGTTCCTGTGTAAGTTGAATTGTGGGTGATTGTTGAATTGTGTGAGAAAAGTTATGAAGCTTGCATTCAGTTAATTTTCATAGCATGGGCTCAGGAACCCAACATGCCATTTGCTGCCATGATTTAAACACGACTAGTTTAGTCTTACTTTGCTTTCACAGCATGACTGATGTACAGAATGATGACCTCTAGTAGTCCAGCAGGAACCTACAAAGGGAATTTAAATAAGGGCTTATGTatctggaaaataaaaaataactaatgAAACTACCGACCTAATGAAGGGCTATGAAATTAATCTTTCAGTAAAGTGTTTGTTTGTACCAGTTAATAGACTTATTAGAGCTGTTAATGAGATAAAGAACATCTTCAATTCACATTTGCTATTATCTGTTTCATTTCACCACTAGGGGGAGCATAGGTTCTTCAGTAAATATAGACTGGAGGGAAAAATGTAATTGAGCCTCAAGTACAAAGAACACTGTTTCGGCTTTGTTAGATTTAGATTGTCTTAGTTTCCTAGGTGAGTAATTTGTGTGCATTTAATGAAACGTTGTAAGCACTTAGAGTAGTTATGGCTATAACTTGCTAAGTGTATAGGTGCTAATTCTCAGGAAAGAGACATGCAGGATGAGTTTACCAAAAGTATCTTCTCAAGTCTTCTACATCTTCAGTAGTTTGTGGGTTTCAGGATTTTCTGCCTGGTTGATTAGTCTAACTTGGTTTGGCTTTTAGGACATTTCTCCCTCTGTTCATTTGAAAGGAACCTTTCTTAGGTGATTCATCAGGCCTGTAATGGCATTCAGATGTGTAATGCCCTTTTTCTTAAGAACTTTTTCTGCATTCAGCCTGTTTTCTCTCAGTTGATGTGGGTTAGATCAAAAAGCTGAAGATTCATCCAGTCTCTGTCATTAATTCCATCTTAAGTGTTTGCCATTCATGTGGGCTTCCTTCTCTGCTATATaacatttatcttttttccctTGTGATTTTAAAGTACATATTCTTAAAGGTTGGGAAatgattcataaaatatgtaacattattaacaattttaagggaaaaatgcattatttgatTCAATGGATTATGTAATTAAATGTGTAATGAGCATCAAGGAAATCAATACACTTCTGAGTCTAATTACTAGTGGTGGATATGATTTTCAGTGCTAATCATTTAGAATGCGTGAAATGAAGTTACTCTGTGAATGTGACTTTTATACGTATGCATACGTTGAATTCTTGATTTCCCAACATTTATATGCAAAATTTGTAACATTTTGACAGCTCAATTCtctaaaataaaacttattttGATACCAA

Function

GO:

id name namespace
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53680 lncRNA downstream 39234 12906274 ~ 12906475 (-) True G45422
TU53642 lncRNA downstream 77253 12866108 ~ 12868456 (-) True G45395
TU53662 lncRNA downstream 83657 12858974 ~ 12862052 (-) True G45415
TU53663 lncRNA downstream 83657 12859045 ~ 12862052 (-) False G45415
TU53656 lncRNA downstream 98996 12846507 ~ 12846713 (-) True G45409
TU53880 lncRNA upstream 293694 13248942 ~ 13250377 (-) True G45586
TU53928 lncRNA upstream 352846 13308094 ~ 13310240 (-) True G45616
TU53934 lncRNA upstream 357702 13312950 ~ 13313156 (-) True G45622
TU54091 lncRNA upstream 475117 13430365 ~ 13430899 (-) False csgalnact2
TU54100 lncRNA upstream 509248 13464496 ~ 13464739 (-) True G45755
XM_026941562.2 mRNA downstream 28647 12912810 ~ 12917062 (-) True znf511
XM_026944730.2 mRNA downstream 68469 12875214 ~ 12877240 (-) True si:ch211-217g15.3
XM_026945631.2 mRNA downstream 135195 12791580 ~ 12810514 (-) False slc1a4
XM_026945623.2 mRNA downstream 142330 12791580 ~ 12803379 (-) True slc1a4
XM_026944772.2 mRNA downstream 155265 12785998 ~ 12790444 (-) False cep68
XM_026937810.2 mRNA upstream 50238 13005486 ~ 13031196 (-) False slka
XM_026937804.2 mRNA upstream 50238 13005486 ~ 13031196 (-) True slka
XM_026937818.2 mRNA upstream 50238 13005486 ~ 13031194 (-) False slka
XM_026943905.2 mRNA upstream 99167 13054415 ~ 13091908 (-) False kat6b
XM_026943915.2 mRNA upstream 99167 13054415 ~ 13091656 (-) False kat6b
trnal-cag other downstream 211427 12734200 ~ 12734282 (-) True trnal-cag
trnae-cuc_9 other downstream 276818 12668820 ~ 12668891 (-) True trnae-cuc_9
trnak-cuu_2 other downstream 277144 12668493 ~ 12668565 (-) True trnak-cuu_2
trnak-cuu_1 other downstream 306107 12639530 ~ 12639602 (-) True trnak-cuu_1
trnae-cuc_8 other downstream 306386 12639252 ~ 12639323 (-) True trnae-cuc_8
XR_004577863.1 other upstream 50238 13005486 ~ 13031196 (-) False slka
XR_004577668.1 other upstream 1226643 14181891 ~ 14192243 (-) True ccdc85a
TU55100 other upstream 1824617 14779865 ~ 14784734 (-) False sdhaf4
TU55523 other upstream 2458693 15413941 ~ 15416483 (-) False c3h10orf53
XR_004577773.1 other upstream 4023883 16979131 ~ 16982729 (-) False morn4

Expression Profile