RNA id: XM_026934367.2


Basic Information

Item Value
RNA id XM_026934367.2
length 7578
RNA type mRNA
GC content 0.43
exon number 33
gene id ttll5
representative False

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 10126333 ~ 10207794 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACCCTGTCTTTTTCACGTCACTAAaccgcgcatgcgcactggGATGGTTGCCGGTTGGTTGCTGTAGTTACAGCACAGGGGAAAGAAAAGCAGTACACCTGCGCTCATCCTGTCAAGTTTCGCTGTGTTTATCCTTTTAGTTTTCGCACCACCAgGTGTCTGCAGATTGGAGATGTGTGCTGAGATAATCTCATTTAGCTGACATACTGCAGATCCTCTCTGTCTCGGTGGTGGAAATGCCAGCTGTGAGCCAGGATAAAGAGGATTCCCAGTCTCCATCAGAAGAAGAGCTAGAGTGCCATCCCTGTATAGCCTGGAGTGGGATCAGCAGGAAGATCCCAGTTCTACTCTTCCATGCTGAAGCTATTGTATCCAAAGAGGAAACTATTTGTTCCGTTGGCGaaAGATACAACTTGGCCTTCAAGATTGTACGTACAGAGAGTCGACTCGTGCGAAGCATTCTTGTGAATCATGGATTCCATGAGGTCCATCCAAATAGTAATGATTTCAACCTCATGTGGACAGGCTCCCACCTTAAGACTTATCTGCTCCGCAGTTTGCAGGATTTCCAGAAAGTCAACCACTTCCCCAGGTCAAATGAGCTGACACGGAAAGACcggctgtacaaaaacattcagCGGATGCAGCAGGCTCATGGATTTCAAAACTTTCACATTGTACCTCAGACCTTTGTTCTTCCTGCTGAATATCAGGAATTTTGCAATGCCTTCTGTAAGGACAAGGGTCCATGGATTATCAAACCTGTTGCATCTTCCAGAGGCAGAGGCATCTACCTGGTCAGCAGTCCGAGTCAGATCTCATTGGATGAAAACATCCTGGTGTCACGGTATATTAGCAACCCGTTACTGATTGATGATTTTAAGTTTGATGTGCGATTATATGTTTTGGTGACGTCTTATGACCCGGTCATTATCTATGTCTATGAAGAAGGGCTAACTAGATTTGCTACTGTGAAGTATGACCATGCTGTGAAGAACATCAAGAACCAGTTCATGCACCTCACCAACTACAGTGTAAACAAGAAGAGCAGTGACTATGTCAGCTGTGATGACCCTGAAGTAGAGGATTATGGGAACAAATGGAGCATGAGTGCAATGCTGAGGTATTTAAAACAGGAGGGAAAGGACACCACATTGCTGATGGGTCAGATAGAGGACCTGATCATTAAGGCTGTGCTGAGTGCAGAGTTACAGATTGCTACAGCCTGCAAGATGTTTGTCCCTCATCGCAACAACTGCTTTGAATTGTATGGTTTTGATGTTCTCATTGATTCCAACCTCAAGCCATGGCTCCTGGAAGTGAACCTCTCTCCATCATTGGCATGTGATACTCCTCTTGACCTGAAAATAAAGGCCAGCATGATCTCAGATATGTTTTCTCTTGTGGGCATTGTATGCCAGGACCCTCTACTAAAACAGATGCGGTCAGAAAAGGCTGGACTTGACCCAACTGTAAAGAACCACAAAACTCAGGCTGCCTCTGCCAAATCCAGAGTGAGACCTCATTCTGCCAATAATATTGAGGagctgaaagagaaacaggGAAGCAGGCATGTGGACACGCTGGGCTTGACTGCAGAGGAGTTAAAAGTCCTGAGGAGGACACAGGAGGAGCACGAGAGGAGAGGTGGATTCATCCGTATTTTCCCCACACCACAAACTTGGGAGCTCTACAGTCGTTATCTGGAATACAAGACATCCATGAACTCCATGTTGGCTAATAAACTTTTCCATGGAAGgTCAGAAAAATCCTCTGTGACCACACAATTCAGGAATAGATTGAAGGGTAATATGCCCTTAGAAGAGGAGGCCTATAAAACCTGTCATGTAGTTCAGTATGAGAGCAAATTGCTCTCTCTCGAGGCACGAAGACACAGGAAAAGGCATACGACTAGCCGTGCCACTCCTCGGAAAAGGAAAACTGGTCGAAGGCCTTTACCATCATCAGCGCACAGCAGTGAAAATGAGGAAgctgatgagagagaggagCGAGGACCACAGGGAAAGCAGGAGCACACAATGTCTCTGGCACACACAGACCCTCAGCCCACCCTGTTGGAGAGGCACCGAACTGAAGAACACTTTCCAGCTAGAGTCAGCAAACCCAAAGTGGATCTGCTCCATATTCTCCAGCAGGGGTGGGATCTCAGTAAGGTTCAGGCACGCATGGCCTTCTCCTCTTATCTCCATCGGGTCCAGATGAGACTGCTTGTAGAGAGCAGAACCAACAGTACCCCAGCATGGGAACAAAAGGACAATGACCagatgGAGCTGGTAATGCGTTTTCTGATGCGAGCTGCCAGTAACCTGCAGCAGGGCATGCAGGTGGTGTTACCCAGCCGCCAGCTTTCCCTGCCTGACCGTCGCCGCATACTGGCCCATCAGCTCGGGGAGTTCATCCACTGTTATAACCAGGAGACAGAACAAATGGCAAAAAGTTTGGAGAAGACTGAAGATGAAGATCGATGCATCAGTTCAAACGTGTTTCGGGAGTTTATTTTGGAAGCAAGTGAAAGTGATCTAGAAGATGTCCTCACTTTCtacacacacaagaacaagtCTGCCAGTGTGTTTTTGGGGAGTTCCAGAAGAGACCGTAACAAAGAATGCAGTAACAGCTCAGGAGAGCCAGCAAAGCATCACAGCAGGAGAAATCTGTTAAATTCCAAAGAAGGCTCTAGCGCTTCAGGATTGTCGCTGACTGCCAAGGCCGACTCACCAAAAAACGCAGAAATCCAAGAGAGTGTAACCAGACCAGGATACAACAAAAGCAGTATAACTGTGAATATGAACAGCCATAGTAACACTATCCAAAACAGTGACAAATATAGTACATTAAATAATGGTggacacaaaaacaacaaaattcaaaatggaaaTACAGTGACAGAAGGTCAGCCTGAGGCCTCAACTGCCTTTGGGACTCAAACTaatgaaagcaaaacaagaGGTTTACAAGATGGAGAATTTTGGAATAAAAGTTCCCACATTACAGTTGTTGGAAATGACGATGAACTGTCAAAAATGGTTAACGATGTCATTGAGCAGCCTGAAACTGCAAAAAATTGTAAATCGCAAGTCAAGGCCCAGGGTTCTCAACACACTTCATCTTATCGTGCAGCCCTAGACTGTGAGCATATCCACCTGCAGCAGTGCTTCCCACGATCTGAACCTGAAGCTCAGCCCCAGGCTCAACCTCCTCCTTATATCCATCCTCCCCCACACCTGCATGCTGATTCTCAACGCGAACCACAAACTACTTTATCTTCTTCAAATACAAATTGTCTGCGGCCTACACGAGTAATGTGGGCTTCATCAAATTCACGTTCGCCCAGATCATTTGCAACTACTGAAGTGCTACAACAAAGCCAGGGTTCACAAATGGCACAGCTGGTCACTAGTGGTGTTTCATCTTCCACTGCCTGTACTACAAACATGTACAGTCAGACTGTCTTATGGCCTTCTTCTGCAGTGCAAGTGAGTAATAAGGCCAGTAAGGCCAGACCTGCTTCTGCGGGAATGTTTAAGGAGCCAGATTCACTCTCAGCCCAGGCCCAGTCAAATCATCAGGCTATTGTGGCTGCCCTGAAGAAACTAGTGGAGAAACAAGCTGCTCGCCAGTACAGCACCTCCAGCCACATTagtctccttacacaacattTGACCAACCTGAACCTAGCTAAAGGAGTTTTCAGCAGAGGGGCTCAGAGCGTCACATCAGGAGCTCGGCCTGATACAGCGACAACTCAGCACTCAGGCATGAACCTCTCTGGTACTGTGAGCAGTCACAGGAAGGATGCTGGTGATGGAAAATGCCAGAGTACCTGTAATTTGTCTACTGGAGCGACTTTGCAGCCTGCATCAGGCAGCTATCAGCTCCAGTTTGCCATCCAGCAGCTCCAGCAGCAGAAACTGCAGTCCAGGAAGCTACTGGACCAAAGCCGCTCTCGACATCAAGCCATGTTGGATGGACACACGTTTGTGCCTGGTGCTGTACCCCGAAACCCTGTTCCCGCCAGCTGTAGCGTTCAGGTTGACTCACAGTCCCAGACCAGCATAAAGCAGACAGCAAGTTGGAGAGATTCATGCCATCCTGAACCCCTGGTCCCTACACGGGGTGCCGCCACTCTGATTCCCAAACCCCCCAGCAGCACACCCAAAGAGACACTCTCACGCAAGACTGCCACTCAAAGGACCAACCAGCAAGCACCATATGAGGCTCCATCCGGAAATGGCTTATCCAGTCGACAAAATGTTGTTTATGACACCACGTGTGGAAAAATGGGTCTGTCTGTGTACAGCAAAGTATTCGACGCTCAGAGGTCCAGACCCAGATGACTGAGCGAGGACTGGTGCAGTGATTACCTGCTGCTGTTGGATCTCTTCACAGGAACAATTTTTATCATTCAGACTAAAGTGTCAGTATGGTTTACCATGATGGAATAGAAAATTCTGTTAAATGAATAGGTGGGCTAAAATTCCCACAATTCTTCCCTTCTTCCCCGAATGCAATGAATCATTTGAGGTGTACAGTGTAAGAAATttgctttttcagtttttccacTGGACCTACAAGTCTAATGTGGATAACAAGCAAGGGACGCTTATACAGTAGCTGCAAGCCTCCATCGCATAATTGCTCCACACCAGTTGTTATATAATCCCAAACAGACTTGCTGCTGTGGTTTCTGACAGTTACACACTGTTAGCTATTAGAATATGCTGCATATCTAAAAACAGTAGTAGCAGCCATCTTAAATCAGGTATCACTTTGTTCATCAGCAATTAGTTTGGTATCACACTGCACAAGCATCATACTTAGGGGTAGGAGGTGTAGTTTAAAGGCGAAATTGTACATGTAAAGTGTTTTGGGTGACAGTTTGgtcatttgtatatttaattaacaaGAACTTGCTCTGTTATTTTATGAAACTGTTCATATACACATGGTATTATTGAGCCAAAACATGCCTTTTGCACGATCTTACACTGGTAGCTTAAAAGTCTCCTTATTTGTTAGCCACATGAGCCTTATAACTCTAATACAAAACTAAAGCAAACTAAACATGGGGggaaatttgtgtaaattaaatttttggCTGAATTATTCCTTTAAACAAAGTGACATCTACATCCTCTCCTCTTTGTCTCTCCACTGTGCAGCCAGCATaccataaacattttttatattctctgCTAGCTAATCTTGTTTTACTGTTATCTTGCTTCATGTCCCGGCCCCCGCACTAGACAAGAATCATATCCTTCCGTGTGGTGGAGGAACAGCTGACAAATGCTACTACCCCTGAGACAGTGTCTGACATAAAACcgaccttatttatttattttttttggagagCATGTGGCTGTGAGGATAGCATGCTGTGTAAGAAATCCCTGGCTTTGACACGAGCTCAGATCTGTTCCATGGCCCAAGATTTTCCGGTGGCCTTCAGTTCCTCCCCGTCCTATTGCTGCAGTTGTCCAGCCCCATTCTCACCCTGCAACTGCTGCCATCAAAAGACTGTGTGAATAGACAGGCAACAGCAGCTGCTAACTCTACTCTGCCTCTCAGGCTGAGCACTATAACAGAGCAGAAGAGTAAGCTTccttacacacactttcagactTCGATCTTCAGTAGACTTTACTATTCACTTTCAGAGTTAGAAACCTGTGACCTGTGATTAAAAGATTGCATATTTGAGCTTGAAAGAATCTTATCAGGTATAATGTATGCATTAAGTATAATTGTGGAATAAACCACAATGGGGTGTGGTATGATACTTccacaatgtgttttattcctcctataccacagcgatttgctaatgattacagtttttctatttattaatgaacaaaatcttATGCTTCTTTAACTTTTTTCatagttatattttatgttatggAAATTCTGCAAGACAAGATACTTCCTTAcgttctagcagctataaacaatcctTCACTCACCAGtgtctcttattttctctcttaataaaacaaaaatcacagcttgtcatgttaccaagaaactacaAAGCAAAAAGTCCTCCGTCATAAAGACTTTGCTGTGGTGGAGCCCTTACTGAGCTTCACAAAgctgtgacactggagactcccttaataaatgttaaagaaacatctcctaacagaaagctgCACTATCAGAGATTATACCTTTCTTTTTGacaaatacatgttttttaaatctatttgtGTAGACTGCCCATCATATAAGgccctgtgaataagctgaaatgataatgtagtagaacgagcgcattaatataaacactttCAGATTCAGGAATTCTGCAGTGTCGTGGTATAATGCTGATTATAAAGTGCATTAAGGCTGATTATAAAGAGCATTAAGGCTGATTATAAAGAGCATTAATGCTGATTATAAATTATTGCCAAAGGACAATTGCCTGGTAGTAGAGATTGTGATCAGCACACATACCTTCACGTATTAATAAGCACTGTGTCAGTCGAGACCATAATACTCTCCACAAGTGCCTTATCACGGGGCCACATACTGCTTGTGTATTGAGTTTTATTACCTggtttgctttattttatgaTCAGTTCCAAATGTACTACACTCATGCTAGCAGACTAAAACAACTGAATCTCTAGGACTTAATGGCTCCATtggatcagtgattggtgtaCTTCATTAACAGACCCTGAAAATAAGTCTGGTTGATAAATCGTGGGATTCTTCTTAATGTCTTTCCACAGAAAACGGTTAACCCTCCTACAGAGTACACcagttttatccatttacagctCCATAGGGAAAGTCCTGTTTCTTGAAGAGTTAATAGTTTAATATCTTAAAAGGCTTGACAGTCTGCGTGACTAATAGTTGGGTTTTGTTGATGTTTTACAAAACTTCAACATATTTTTGACACAAGTTAATTAGAACAAATGGTGTTTCTCTTTTTAGTTACAGGTCATTAGTTATTCTCAGTCATAAAGTCTGGCCagcaatgtactgtatattattgaTGTATGCAAAACAAAGCCTTATGTCCCCCAAAGAGGATATTGTACTGTAACATTTATCAACTCAGGGTTTGGTATTTtagagaaaatgtatttttagcttttaaggtgttattgttttatattgtatttgtcttgtgtgcattattataaatccaatattttgcattattaattatttcagtGTAGAACCAAATATTGAAAGTGTATGACCAAAATGTTGTATGAATACTACATGAAAACATTGAGTCATTGATATTTGTACATAGTAGAAACAGGGTGGAAACAATCAAATTTTTGCAGATAGTACATGTTGTGAAATGCTTTTGATTTCTTCTGCATTGACTTTATTACAGTGTAGAAGAAAATTGCTTTTTCTGTGGCACAGCTAAAagaatgtaatgtgtgtgtatacttgaACATGTGCTTGTTTATGCAACCATGCTGTCATCCTTTCCATTAGTAACTACATCATGATTTTTGGTTGTATCTTTCTCATTCTgcattaattatttcattaaaaactacaaatttttctcatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192507 lncRNA downstream 276004 9843776 ~ 9850329 (-) True G162548
TU192503 lncRNA downstream 301584 9824614 ~ 9824749 (-) True G162545
TU192470 lncRNA downstream 504648 9621382 ~ 9621685 (-) True G162514
XR_004578962.1 lncRNA downstream 538031 9586707 ~ 9588302 (-) True LOC117598277
TU192446 lncRNA downstream 576753 9549342 ~ 9549580 (-) True G162497
TU192798 lncRNA upstream 46210 10254004 ~ 10254213 (-) True G162812
TU192806 lncRNA upstream 51658 10259452 ~ 10261141 (-) False acyp1
TU192812 lncRNA upstream 54649 10262443 ~ 10264117 (-) True G162818
XR_004578983.1 lncRNA upstream 83855 10291649 ~ 10293566 (-) False LOC117598311
XR_004578982.1 lncRNA upstream 83855 10291649 ~ 10293566 (-) True LOC117598311
XM_026934370.2 mRNA downstream 21162 10085132 ~ 10105171 (-) True LOC113538921
XM_026934372.2 mRNA downstream 21166 10085132 ~ 10105167 (-) False LOC113538921
XM_026934341.2 mRNA downstream 70261 10026023 ~ 10056072 (-) True LOC113538905
XM_026934340.2 mRNA downstream 70265 10026023 ~ 10056068 (-) False LOC113538905
XM_026934393.2 mRNA downstream 133591 9941257 ~ 9992742 (-) False esrrb
XM_026933709.2 mRNA upstream 7049 10214843 ~ 10230701 (-) True flvcr2a
XM_026933715.2 mRNA upstream 26177 10233971 ~ 10247148 (-) False jdp2a
XM_026933714.2 mRNA upstream 26177 10233971 ~ 10236761 (-) True jdp2a
XM_026934310.2 mRNA upstream 40112 10247906 ~ 10250756 (-) True fosaa
XM_026933932.2 mRNA upstream 51655 10259449 ~ 10261465 (-) True acyp1
trnas-aga_11 other downstream 497859 9628393 ~ 9628474 (-) True trnas-aga_11
XR_004578987.1 other downstream 609882 9491217 ~ 9516451 (-) False LOC113538771
LOC113545095 other downstream 1061055 9060569 ~ 9065278 (-) True LOC113545095
LOC117598341 other downstream 1066525 9057963 ~ 9059808 (-) True LOC117598341
TU190625 other downstream 2912949 7205468 ~ 7213384 (-) False zgc:103755
trnal-aag other upstream 333 10208127 ~ 10208208 (-) True trnal-aag
trnal-aag_1 other upstream 1755 10209549 ~ 10209630 (-) True trnal-aag_1
TU192804 other upstream 51658 10259452 ~ 10261141 (-) False acyp1
TU192807 other upstream 51658 10259452 ~ 10261178 (-) False acyp1
TU192936 other upstream 196291 10404085 ~ 10415002 (-) False LOC113538721

Expression Profile