Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026934370.2 |
| length | 964 |
| RNA type | mRNA |
| GC content | 0.50 |
| exon number | 10 |
| gene id | LOC113538921 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047604.1 |
| NCBI id | CM018550.1 |
| chromosome length | 29376037 |
| location | 10085132 ~ 10105171 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0060271 | cilium assembly | biological_process |
| GO:0035721 | intraciliary retrograde transport | biological_process |
| id | description |
|---|---|
| K19675 | IFT43; intraflagellar transport protein 43 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU192507 | lncRNA | downstream | 234803 | 9843776 ~ 9850329 (-) | True | G162548 |
| TU192503 | lncRNA | downstream | 260383 | 9824614 ~ 9824749 (-) | True | G162545 |
| TU192470 | lncRNA | downstream | 463447 | 9621382 ~ 9621685 (-) | True | G162514 |
| XR_004578962.1 | lncRNA | downstream | 496830 | 9586707 ~ 9588302 (-) | True | LOC117598277 |
| TU192446 | lncRNA | downstream | 535552 | 9549342 ~ 9549580 (-) | True | G162497 |
| TU192798 | lncRNA | upstream | 148833 | 10254004 ~ 10254213 (-) | True | G162812 |
| TU192806 | lncRNA | upstream | 154281 | 10259452 ~ 10261141 (-) | False | acyp1 |
| TU192812 | lncRNA | upstream | 157272 | 10262443 ~ 10264117 (-) | True | G162818 |
| XR_004578983.1 | lncRNA | upstream | 186478 | 10291649 ~ 10293566 (-) | False | LOC117598311 |
| XR_004578982.1 | lncRNA | upstream | 186478 | 10291649 ~ 10293566 (-) | True | LOC117598311 |
| XM_026934341.2 | mRNA | downstream | 29060 | 10026023 ~ 10056072 (-) | True | LOC113538905 |
| XM_026934340.2 | mRNA | downstream | 29064 | 10026023 ~ 10056068 (-) | False | LOC113538905 |
| XM_026934391.2 | mRNA | downstream | 91816 | 9941257 ~ 9993316 (-) | False | esrrb |
| XM_026934390.2 | mRNA | downstream | 91816 | 9941257 ~ 9993316 (-) | False | esrrb |
| XM_026934394.2 | mRNA | downstream | 92364 | 9941257 ~ 9992768 (-) | False | esrrb |
| XM_026934367.2 | mRNA | upstream | 21162 | 10126333 ~ 10207794 (-) | False | ttll5 |
| XM_026934366.2 | mRNA | upstream | 21162 | 10126333 ~ 10207793 (-) | False | ttll5 |
| XM_026934365.2 | mRNA | upstream | 21162 | 10126333 ~ 10207792 (-) | True | ttll5 |
| XM_026934368.2 | mRNA | upstream | 36293 | 10141464 ~ 10207793 (-) | False | ttll5 |
| XM_026933709.2 | mRNA | upstream | 109672 | 10214843 ~ 10230701 (-) | True | flvcr2a |
| trnas-aga_11 | other | downstream | 456658 | 9628393 ~ 9628474 (-) | True | trnas-aga_11 |
| XR_004578987.1 | other | downstream | 568681 | 9491217 ~ 9516451 (-) | False | LOC113538771 |
| LOC113545095 | other | downstream | 1019854 | 9060569 ~ 9065278 (-) | True | LOC113545095 |
| LOC117598341 | other | downstream | 1025324 | 9057963 ~ 9059808 (-) | True | LOC117598341 |
| TU190625 | other | downstream | 2871748 | 7205468 ~ 7213384 (-) | False | zgc:103755 |
| trnal-aag | other | upstream | 102956 | 10208127 ~ 10208208 (-) | True | trnal-aag |
| trnal-aag_1 | other | upstream | 104378 | 10209549 ~ 10209630 (-) | True | trnal-aag_1 |
| TU192804 | other | upstream | 154281 | 10259452 ~ 10261141 (-) | False | acyp1 |
| TU192807 | other | upstream | 154281 | 10259452 ~ 10261178 (-) | False | acyp1 |
| TU192936 | other | upstream | 298914 | 10404085 ~ 10415002 (-) | False | LOC113538721 |
