RNA id: TCONS_00007764


Basic Information

Item Value
RNA id TCONS_00007764
length 680
lncRNA type lincRNA
GC content 0.26
exon number 3
gene id XLOC_004068
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 16669218 ~ 16675164 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aatactttaaaaaattattcgaagtcattttttttcatgcatcactctgcagtcttcataaacaagataattaaataacttaaactcaaaattatcttccttgttaatttatttgacaagtaacattGTACTGGTGTAAGATAACACATTTCTTACactcaagtacatcaaggcacattgttgctCCTGTAAACTCTGACAGATAGGCCTACAgttaaagtaattttattttgccctccatttcatttaaattatgtttCTGACCATTTTTACAGTGCttcctaaaaaaaattattctggagtcataataagtcctatttcttattgtttatttcgtgATtaaaggcagtttttaatttaaataaaaatatgctaagtattattagcctttttaagaaatatttacagtatctttttgatatacacaacaaatcagttacaaaataattttactaattatttcaACTTTTGTAGGGAACTGATTAagtctaaattacactttaatcttaataaaagactataaaatacttaaagaaactttgtctgaatacaactgtcttgcaaaataGCTAATAAAATGTTATTCACTGACTGTCAGCATGGTGAAGATAAAAAAGTAGATATTAGAATTAGTTAAactcatgtttaaaaatgtgttgtaaataaatcatgtgttgaag

Function

GO:

id name namespace
GO:0038024 cargo receptor activity molecular_function
GO:0005044 scavenger receptor activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000165009

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007762 lncRNA downstream 273916 16373672 ~ 16395302 (-) True XLOC_004066
TCONS_00007756 lncRNA downstream 487530 16179952 ~ 16181688 (-) True XLOC_004065
TCONS_00008461 lncRNA downstream 548928 16120012 ~ 16120290 (-) True XLOC_004062
TCONS_00007750 lncRNA downstream 553428 16104008 ~ 16115790 (-) True XLOC_004061
TCONS_00007739 lncRNA downstream 822705 15845588 ~ 15846513 (-) True XLOC_004057
TCONS_00008783 lncRNA upstream 406258 17081422 ~ 17091195 (-) True XLOC_004070
TCONS_00007766 lncRNA upstream 418589 17093753 ~ 17097933 (-) False XLOC_004071
TCONS_00007767 lncRNA upstream 418829 17093993 ~ 17095206 (-) False XLOC_004071
TCONS_00007768 lncRNA upstream 419049 17094213 ~ 17096432 (-) False XLOC_004071
TCONS_00007769 lncRNA upstream 419069 17094233 ~ 17097930 (-) True XLOC_004071
TCONS_00007757 mRNA downstream 273262 16329776 ~ 16395956 (-) False XLOC_004066
TCONS_00007760 mRNA downstream 274247 16333005 ~ 16394971 (-) False XLOC_004066
TCONS_00007759 mRNA downstream 274247 16333005 ~ 16394971 (-) False XLOC_004066
TCONS_00007761 mRNA downstream 332437 16333162 ~ 16336781 (-) False XLOC_004066
TCONS_00007754 mRNA downstream 453748 16176603 ~ 16215470 (-) False XLOC_004065
TCONS_00007765 mRNA upstream 63015 16738179 ~ 16975190 (-) True XLOC_004069
TCONS_00007771 mRNA upstream 921815 17596979 ~ 17713987 (-) True XLOC_004074
TCONS_00007772 mRNA upstream 1051485 17726649 ~ 17755444 (-) True XLOC_004075
TCONS_00007773 mRNA upstream 1082178 17757342 ~ 17782930 (-) True XLOC_004076
TCONS_00007774 mRNA upstream 1110018 17785182 ~ 17803071 (-) False XLOC_004077
TCONS_00007763 other downstream 24705 16644397 ~ 16644513 (-) True XLOC_004067
TCONS_00007758 other downstream 332332 16332824 ~ 16336886 (-) False XLOC_004066
TCONS_00007751 other downstream 541540 16127382 ~ 16127678 (-) True XLOC_004063
TCONS_00007745 other downstream 610911 16058191 ~ 16058307 (-) True XLOC_004059
TCONS_00007744 other downstream 647747 16020929 ~ 16021471 (-) True XLOC_004058
TCONS_00007777 other upstream 1231738 17906902 ~ 17908682 (-) True XLOC_004078
TCONS_00007803 other upstream 1916835 18591999 ~ 18604435 (-) True XLOC_004089
TCONS_00007814 other upstream 2505288 19180452 ~ 19180555 (-) True XLOC_004095
TCONS_00007815 other upstream 2741014 19416178 ~ 19416315 (-) True XLOC_004096
TCONS_00007850 other upstream 4904762 21579926 ~ 21585161 (-) True XLOC_004113

Expression Profile

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