RNA id: TCONS_00007756


Basic Information

Item Value
RNA id TCONS_00007756
length 748
lncRNA type retained_intron
GC content 0.43
exon number 2
gene id XLOC_004065
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 16176603 ~ 16215470 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAAAAGACGCCTCCCATCGCAAAAAGCTTGTTCAGTGTGATCAGCCCCTtgttatgtattaaaatatataaacaatttaattattatatttattattttatatttatttatttttgactatatatatttttcaaaaccatggtatatttttctttttcaggatTTTTTGAAAGTTGAAAACACATTTTGATTGTGcttttacacatttatatacTCAGGTAACAACTAAGCGAGCACAAGCTTGGTGTCAGAGTAAGAACAACATCCCATATTTTGAGACCAGTGCAAAGGAGGCCATCAACGTAGAGCAGGCATTCCAGACCATCGCGCGCAATgcactcaaacaggaaaCTGAAGTGGAGTTATACAACGAGTTCCCCGAGCCAATTAAACTAGACCGGAACGATAGAGCCAAACCATCAGCAGAGACCTGTAGCTGCTGAGGACCTCCAGGGGGCGCAACATTTCACCCTCAGCCTCTCTGGCCTCGTCTCTGCCTCATTCCCTCCTCCtcactctcattctctctcttgcGTTCTTTCTTTcaccccaacccccccccccccctcccccttcCCCCAGTTCTTCTTCATCGCCTTCCCACCCTCTACTTGATATAATCACTGGCCTTTGTAGACGAGCAGACTTCCTCTCATTCAGTATCCCACACAGTTCTTATTCACAGCCTTagacacaacatacacacacatatgctcaAGAGGCTCAATCTGGCACCAATTTCATACA

Function

GO:

id name namespace
GO:0016197 endosomal transport biological_process
GO:0090385 phagosome-lysosome fusion biological_process
GO:0008333 endosome to lysosome transport biological_process
GO:0005764 lysosome cellular_component
GO:0005770 late endosome cellular_component
GO:0045335 phagocytic vesicle cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
ko04144 Endocytosis
ko04145 Phagosome
ko04140 Autophagy - animal
ko04138 Autophagy - yeast
ko04137 Mitophagy - animal
ko05132 Salmonella infection
ko05152 Tuberculosis
ko05146 Amoebiasis
ko04131 Membrane trafficking
ko04147 Exosome
ko04031 GTP-binding proteins

ZFIN:

id description
ZDB-GENE-040426-1352 Predicted to enable GTP binding activity and GTPase activity. Acts upstream of or within endosomal transport. Located in late endosome. Is expressed in neural crest. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2B. Orthologous to human RAB7A (RAB7A, member RAS oncogene family).

Ensembl:

ensembl_id ENSDART00000134856

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008461 lncRNA downstream 59662 16120012 ~ 16120290 (-) True XLOC_004062
TCONS_00007750 lncRNA downstream 64162 16104008 ~ 16115790 (-) True XLOC_004061
TCONS_00007739 lncRNA downstream 333439 15845588 ~ 15846513 (-) True XLOC_004057
TCONS_00007734 lncRNA downstream 370933 15806643 ~ 15809019 (-) True XLOC_004055
TCONS_00007733 lncRNA downstream 372444 15806392 ~ 15807508 (-) False XLOC_004055
TCONS_00007762 lncRNA upstream 191984 16373672 ~ 16395302 (-) True XLOC_004066
TCONS_00007764 lncRNA upstream 487530 16669218 ~ 16675164 (-) True XLOC_004068
TCONS_00008783 lncRNA upstream 899734 17081422 ~ 17091195 (-) True XLOC_004070
TCONS_00007766 lncRNA upstream 912065 17093753 ~ 17097933 (-) False XLOC_004071
TCONS_00007767 lncRNA upstream 912305 17093993 ~ 17095206 (-) False XLOC_004071
TCONS_00007753 mRNA downstream 27552 16143325 ~ 16152400 (-) True XLOC_004064
TCONS_00007752 mRNA downstream 27847 16139897 ~ 16152105 (-) False XLOC_004064
TCONS_00007748 mRNA downstream 64148 16094661 ~ 16115804 (-) False XLOC_004061
TCONS_00007749 mRNA downstream 64148 16094662 ~ 16115804 (-) False XLOC_004061
TCONS_00007747 mRNA downstream 86930 16084581 ~ 16093022 (-) True XLOC_004060
TCONS_00007757 mRNA upstream 148088 16329776 ~ 16395956 (-) False XLOC_004066
TCONS_00007760 mRNA upstream 151317 16333005 ~ 16394971 (-) False XLOC_004066
TCONS_00007759 mRNA upstream 151317 16333005 ~ 16394971 (-) False XLOC_004066
TCONS_00007761 mRNA upstream 151474 16333162 ~ 16336781 (-) False XLOC_004066
TCONS_00007765 mRNA upstream 556491 16738179 ~ 16975190 (-) True XLOC_004069
TCONS_00007751 other downstream 52274 16127382 ~ 16127678 (-) True XLOC_004063
TCONS_00007745 other downstream 121645 16058191 ~ 16058307 (-) True XLOC_004059
TCONS_00007744 other downstream 158481 16020929 ~ 16021471 (-) True XLOC_004058
TCONS_00007741 other downstream 160337 16017883 ~ 16019615 (-) False XLOC_004058
TCONS_00007689 other downstream 2697165 13482671 ~ 13482787 (-) True XLOC_004029
TCONS_00007758 other upstream 151136 16332824 ~ 16336886 (-) False XLOC_004066
TCONS_00007763 other upstream 462709 16644397 ~ 16644513 (-) True XLOC_004067
TCONS_00007777 other upstream 1725214 17906902 ~ 17908682 (-) True XLOC_004078
TCONS_00007803 other upstream 2410311 18591999 ~ 18604435 (-) True XLOC_004089
TCONS_00007814 other upstream 2998764 19180452 ~ 19180555 (-) True XLOC_004095

Expression Profile

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