RNA id: XM_026922045.2


Basic Information

Item Value
RNA id XM_026922045.2
length 4578
RNA type mRNA
GC content 0.49
exon number 8
gene id adamts15a
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 8755639 ~ 8775242 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGCGCTTCAACGATGATGTCGCGAGCAGAGAGGCGCTAGCCAATCAGCTCAACCGAAGACCTTCCTCAAAAGCTCCGGTGACAGGCACTCGCTGTTTACACATGACCTGCGCGCATAAAGCCAGCGCACGCGGAAGGACGCTTGAGCATCCAGGTGCAACAAGGGAATGGATCGAACGCTCGCAGGCGACATTTTAGTCCGTCTCCGTTATTCGGATTATTCTTAAACGCACTGATTAAATACCTTAAAACTGGTTCATTTTTTCCCAAGATTGCGTCCTGTCCCTTCTCGTCCGTAGAAATCTTACAGCATTTTGCATGCAgtcatgtttttattcacaAGGGCTGTGCTTTTTGTGAACGTTTTATTAGTGATTTGCAAATTTGCGCGCTCCATGCAGAGTCAGCTGTGCGAACCTGTCAGAGTGGATAATCATGACTATGCAAATAACAACTTTGTCGGTTCTGAAATGAACGCACCGCCGAAAAAAGTGGCTTACCAAGTAAGTGCGTTTGGACAGGATTTTGTGCTCGACTTGCACACGGATTCTAGCTTCATCGCACCCACGCTGTCGACGTTGGGCATGCCCCTTGGGTCCGAGCGCGCGGACCTTCGGCGCTGTTTCTACGCGGGCACCGTGAATTTGGATCCACTCTCGTACGCGGCTCTCAGTCTGTGCGACGGCCTGCGCGGCGCGTTTGGCTACGACGGCTGGGAGTATTTTATCAATCCGGCAAGCGACGACTCAGTGTCTTCGGGTGCGCGCCGGAGCGCGGAGAGCGCGCACCTTCTGCGGCGACGCGCCAACGCCGAGCTTGGTGGCAACGGCACGACGCGATGTGGCGTAGACGGTGGCCCGACGCCCGATGTCGCACGCTCCCTGGAGAAGTTTAAACGCTCCGAAGAAGCTAATGCTGGCGTTAAAACCAACGCACAGAGGAGTCGGCTCAAGCGATTCGCATCGGTGCCTCGGTACGTGGAGACGCTTGTGGTGGCCGACGAGTCCATGGCCAATTTCCACGGTGACGATCTGAGGCATTACGTGCTTACACTCATGGCAGTGGCGGCTCGCCTCTACAAACACCCAAGCATCCTGAACCCCATTAACATCGTGGTGGTCAAGTTCCTGGTGGTTACCGACGAGGATAAAGGGCCCAAGGTGACCGGCAACGCAGCCATGACCCTGCGCAATTTCTGTACGTGGCAAAAGAAGATCAACAAGAACAGCGACAAGCACCCGGAGTATTGGGACACCGCCATCCTGTTCACCAAAGAGGATCTGTGTGGAGCCTCCACGTGTGACACTCTGGGCATGGCAGACGTTGGCACAATGTGTGACCCAAAGAGGAGCTGCTCAGTGATCGAGGATGATGGCTTGCCTTCTGCATTCACCACTGCTCACGAGCTTGGCCATGTATTCAACATGCCCCATGATAACGTGAAGGCATGTGAGGATGTATTTGGAAAGCTACAGGACAATCATATGATGTCACCGACACTGATCCGGATAAACCGCACCAGCCCATGGTCACCGTGTAGTGCTGCTATCATCACAGAATTCCTGGACAGCGGACATGGTGATTGTTTATTGGATCAGCCTGAGAAACCCTTGTCACTACCTGACGTTCTCCCTGGAGTGTCATATGGTCTAGAGAGGCAGTGTGAGCTGTCTTTTGGCACTGGTTCGAAGCCATGCCCACTCATGCAGGCACCGTGCCAGCGGCTGTGGTGCACAGGCAAGACCCGGGGTCAGCCTGTCTGTCAGACACGGCACTTCCCCTGGGCAGATGGCACAGCATGTGGAGAGGGCATGCTGTGCATGCGTGGGGTTTGCATAGAGAAACACGAGATCACCAGGCCAAAGgTGGATGGAAAGTGGGGTAAATGGGGGACATTCGGGCCTTGCTCCAGAACCTGTGGTGGTGGAGTGCAGCTCGCAAAAAGAGAGTGCAGTAATCCAGTGCCAGACAATGGGGGCAAATACTGCCAAGGAGTGAGGGTGAAGTACCGGTCCTGCAACCTCACACCATGCCCAGACACTGGGAAGAGTTACAGAGAGGAGCAGTGTGAGGCTTTCAATGGCTTCAGTCTGAACACCAACCGCCTCACGCCGTCTGTGGTGTGGGTGCCTAAGTACTCAGGCGTCTCCCCTAAAGACCAGTGTAAGCTGATATGCAGGGCTAATGGAACAGGCTACTTCTACGTCCTCGCTCCCAAGGTTGTGGATGGGACTCCATGTTCTCCTGACTCTTCAGGAGTTTGTGTTCAGGGCAAATGTAGCAAGGCGGGCTGTGATGGTAAACTCGGCTCCAGCAAGAAGTTTGACAAATGTGGTGTCTGTGGAGGAGACAATAAGAGCTGCAAGAAGATTTCTGGCCTCTTCACGAAACCTGTTCCCGGCTACAACTTTGTCGTCATGCTTCCAGTGGGTGCGTCCAATGTTGACATCCGTCAGCGTGGCTATAAGGGAATGGTAAATGATGACAACTACCTGGCTGTCAAGAACAGCCGAGGTGAATACCTTCTTAATGGCAACTATATAGTGTCAGCAGTGGAGCGGGACATCATAGTGCGTGGCAGTCTCTTGCGCTACAGCGGCACCAGCGGCCAATCAGAGACGCTGCAGGCTGTAAGACCACTGGGGGAAGCTCTGACGGTGGAGGTGCTGTCTGTGGGCCACTTAACACCTCCACGCATCCGCTATTCCTTCTATCTCAAACGAGAAACCAAGGAGGACAAGGTGTTAAAGAAGGAAGGCAGGACTCTGGCTGAAAACAGCGTTCTCGCTGAGGAGGGAGGGCTTGGGAAAGAAGCCGATCCCCTCAATAAAAAGATTCCACCTCCGTACGTCAAAGAGACTCCACCCCCTGGGAAATGGGTGGCTACTGGGTGGGAGGAGTGCTCAGTGACCTGTGGGAATGGCCTGCAGAGGAGATTGGTACAGTGCATAAAAGGAGACAGCACTCCTGGGACAGACTGCGATCCAGCCAAAAGGCCCAGTGCATTGCGGGTTTGTGGTGACCCATGCCCAGTATGGCATATAGGTGAGTGGTCCCCTTGTTCCAAGACATGTGGCAAAGGCTTCAAACGGCGCCCACTCCGCTGTGCCACTGAGACGGGCATGGTGCTTCCCAGGGATCACTGTGTGAGCATGAAGAAGCCACAGGAGCTAGACTTTTGTTCGTTAAAACCCTGCTAATGACTCCTTTTCCCACAGTACTTCACCTTCCATGTTAACTCCTTTCATGGACTTGTCACTTTGTTAAACAATATACTCAACAAACGAAGAACAGTTAAAAGTTAAACGATCCGGAACTTTATTTGTTCTGGTGcatcttggtttttttttgtcttgcctGCAAAAGAGAAgtgacatgaagaagaagaaaaaactgtTACAAAATTGCCATGTAGGCTAACTTAAATGCCGATCATCTTTTGGGCTAAAAAGAAACATTCCACAGAGTCAAAAAAGTAGCACAGAAATTGCCCTTGTACTGCATGTCCTCCTTAAATCCCTCTTGTGTTAATGCCTCAGAAGGGTCCAGAGTGTCTGGTGAGAGACTGGGGTCAGGTTTCATATAAACAGAGCATGATTTAATTGTTTGATCATTTTCTGTTATCAGTTGAAAACATTAGTTAGTCCTGTTGAATATTCCCTGAATAGTCTACTTGAATATTCCTGGCATAATAAACATTGAGAGAATGCCAGAGTGCTGGAGCAGCAGGAAATTGTTGATTCCCTCCAAGACCTTATTTTGTAGGAGAAAAGTTCTGTCAATTTGTTGTTATTTCTTAGTGATTAGAACTTTCATGCCTTTTAAAACAAGGTACGGCATCACCAATCTACACACCAAATATCACATAGACCTATATAAAAGCTGACGAAAAGGATTCCAACTTAAAAGGATTCAATTATCTTTATATTAGCATATTAATCTTTTTCCTGAATCTCAACAGTAGGTCATTTATCTATAGTTCAGGAGAGACAGTTTACCCTTAGAGTCCAGCCCTGTTTATTCTGCAAACTGTGCCTCCAAGACAGGTTCTTTATCTCAGTTAGTCATCCAACatctcatttgtttttattttatcctcTCTTTCCAGTGAGACAGAGGTACAGCTGCTATAATCAAGCCCTGTCTGGTACAGTAACTAAGTTATTATTATAGCAATGTCTTTTGATGGCTTATGCCACGAAGCATGGTTTTGTGCCGGATGCCAACCTGGTAAACTGACTTTTGTACACAGTGTAAATTCATTTAATGcataatacagtaaaaaaatatatgtgtgtgaggttCTTTGGAGCGACCATATCGTCCATCTAAAAGATGGTTCCTATATGACTTGgaatgttttatccatttttttcttttgcactttAGTACAGCAAAAGAGTTCAACGTCCTGCATGGGCTGCCTTGTATACCATGTATACATCCATCTAGCTGTGCACAAATAAGTCCTGTAAATACCTTtctattttatgtatttttttacgCTGACATTTTGAATTGTCATGACTTCAAGGTATTTATTCCAAATAAAACATGTACTAACGAGATGCTTTATCA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08629 ADAMTS15; a disintegrin and metalloproteinase with thrombospondin motifs 15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU454705 lncRNA downstream 205105 8549013 ~ 8550534 (-) True G383538
TU454706 lncRNA downstream 205217 8549013 ~ 8550422 (-) False G383538
TU454701 lncRNA downstream 208175 8547182 ~ 8547464 (-) True G383537
TU454697 lncRNA downstream 209325 8545431 ~ 8546314 (-) True G383536
TU454693 lncRNA downstream 215028 8539152 ~ 8540611 (-) True G383532
TU454810 lncRNA upstream 1009 8776251 ~ 8776573 (-) True G383629
XR_004577426.1 lncRNA upstream 39419 8814661 ~ 8832279 (-) True LOC117596239
XR_003403241.2 lncRNA upstream 159750 8934992 ~ 9008686 (-) False LOC113531288
TU454977 lncRNA upstream 159778 8935020 ~ 9008645 (-) False LOC113531288
TU454980 lncRNA upstream 222881 8998123 ~ 9008645 (-) True LOC113531288
XM_034300772.1 mRNA downstream 165112 8580097 ~ 8590527 (-) False c27h11orf53
XM_034300771.1 mRNA downstream 165112 8580097 ~ 8590527 (-) False c27h11orf53
XM_026922078.2 mRNA downstream 165112 8580097 ~ 8590527 (-) False c27h11orf53
XM_026922077.2 mRNA downstream 165112 8580097 ~ 8590527 (-) True c27h11orf53
XM_034300770.1 mRNA downstream 167648 8580097 ~ 8587991 (-) False c27h11orf53
XM_026921505.2 mRNA upstream 62436 8837678 ~ 8839745 (-) True timm8b
XM_034300907.1 mRNA upstream 245473 9020715 ~ 9070259 (-) True ubash3ba
XM_026922452.2 mRNA upstream 298522 9073764 ~ 9084084 (-) True f11r.1
XM_026922306.2 mRNA upstream 314485 9089727 ~ 9101289 (-) False usf1l
XM_026922307.2 mRNA upstream 314485 9089727 ~ 9101276 (-) True usf1l
TU454625 other downstream 288627 8466359 ~ 8467012 (-) True G383467
XR_003403254.2 other downstream 407370 8338508 ~ 8348269 (-) False pdzd3b
XR_004577425.1 other downstream 768906 7889060 ~ 7986733 (-) False atp2a3
TU453773 other downstream 1395668 7275671 ~ 7359971 (-) True G382719
TU453022 other downstream 2347801 6405691 ~ 6407838 (-) False emc6
TU454856 other upstream 62437 8837679 ~ 8839734 (-) False timm8b
TU454857 other upstream 62483 8837725 ~ 8839734 (-) False timm8b
TU454858 other upstream 62483 8837725 ~ 8839764 (-) False timm8b
TU454979 other upstream 144168 8919410 ~ 9008645 (-) False LOC113531288
TU455042 other upstream 261624 9036866 ~ 9070250 (-) False ubash3ba

Expression Profile