Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004577426.1 |
| length | 297 |
| lncRNA type | inter_gene |
| GC content | 0.41 |
| exon number | 3 |
| gene id | LOC117596239 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047621.1 |
| NCBI id | CM018567.1 |
| chromosome length | 18889892 |
| location | 8814661 ~ 8832279 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU454810 | lncRNA | downstream | 38088 | 8776251 ~ 8776573 (-) | True | G383629 |
| TU454705 | lncRNA | downstream | 264127 | 8549013 ~ 8550534 (-) | True | G383538 |
| TU454706 | lncRNA | downstream | 264239 | 8549013 ~ 8550422 (-) | False | G383538 |
| TU454701 | lncRNA | downstream | 267197 | 8547182 ~ 8547464 (-) | True | G383537 |
| TU454697 | lncRNA | downstream | 268347 | 8545431 ~ 8546314 (-) | True | G383536 |
| XR_003403241.2 | lncRNA | upstream | 102713 | 8934992 ~ 9008686 (-) | False | LOC113531288 |
| TU454977 | lncRNA | upstream | 102741 | 8935020 ~ 9008645 (-) | False | LOC113531288 |
| TU454980 | lncRNA | upstream | 165844 | 8998123 ~ 9008645 (-) | True | LOC113531288 |
| TU455035 | lncRNA | upstream | 241473 | 9073752 ~ 9074351 (-) | False | f11r.1 |
| TU455050 | lncRNA | upstream | 263406 | 9095685 ~ 9097398 (-) | True | G383841 |
| XM_026922045.2 | mRNA | downstream | 39419 | 8755639 ~ 8775242 (-) | True | adamts15a |
| XM_026922078.2 | mRNA | downstream | 224134 | 8580097 ~ 8590527 (-) | False | c27h11orf53 |
| XM_026921505.2 | mRNA | upstream | 5399 | 8837678 ~ 8839745 (-) | True | timm8b |
| XM_034300907.1 | mRNA | upstream | 188436 | 9020715 ~ 9070259 (-) | True | ubash3ba |
| XM_026922452.2 | mRNA | upstream | 241485 | 9073764 ~ 9084084 (-) | True | f11r.1 |
| XM_026922306.2 | mRNA | upstream | 257448 | 9089727 ~ 9101289 (-) | False | usf1l |
| XM_026922307.2 | mRNA | upstream | 257448 | 9089727 ~ 9101276 (-) | True | usf1l |
| TU454625 | other | downstream | 347649 | 8466359 ~ 8467012 (-) | True | G383467 |
| XR_003403254.2 | other | downstream | 466392 | 8338508 ~ 8348269 (-) | False | pdzd3b |
| XR_004577425.1 | other | downstream | 827928 | 7889060 ~ 7986733 (-) | False | atp2a3 |
| TU453773 | other | downstream | 1454690 | 7275671 ~ 7359971 (-) | True | G382719 |
| TU453022 | other | downstream | 2406823 | 6405691 ~ 6407838 (-) | False | emc6 |
| TU454856 | other | upstream | 5400 | 8837679 ~ 8839734 (-) | False | timm8b |
| TU454857 | other | upstream | 5446 | 8837725 ~ 8839734 (-) | False | timm8b |
| TU454858 | other | upstream | 5446 | 8837725 ~ 8839764 (-) | False | timm8b |
| TU454979 | other | upstream | 87131 | 8919410 ~ 9008645 (-) | False | LOC113531288 |
| TU455042 | other | upstream | 204587 | 9036866 ~ 9070250 (-) | False | ubash3ba |
