Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_003403241.2 |
| length | 901 |
| lncRNA type | inter_gene |
| GC content | 0.43 |
| exon number | 3 |
| gene id | LOC113531288 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047621.1 |
| NCBI id | CM018567.1 |
| chromosome length | 18889892 |
| location | 8919410 ~ 9008686 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004577426.1 | lncRNA | downstream | 102713 | 8814661 ~ 8832279 (-) | True | LOC117596239 |
| TU454810 | lncRNA | downstream | 158419 | 8776251 ~ 8776573 (-) | True | G383629 |
| TU454705 | lncRNA | downstream | 384458 | 8549013 ~ 8550534 (-) | True | G383538 |
| TU454706 | lncRNA | downstream | 384570 | 8549013 ~ 8550422 (-) | False | G383538 |
| TU454701 | lncRNA | downstream | 387528 | 8547182 ~ 8547464 (-) | True | G383537 |
| TU455035 | lncRNA | upstream | 65066 | 9073752 ~ 9074351 (-) | False | f11r.1 |
| TU455050 | lncRNA | upstream | 86999 | 9095685 ~ 9097398 (-) | True | G383841 |
| TU455110 | lncRNA | upstream | 163152 | 9171838 ~ 9172118 (-) | True | G383893 |
| TU455244 | lncRNA | upstream | 177965 | 9186651 ~ 9186880 (-) | True | G384007 |
| TU455245 | lncRNA | upstream | 180299 | 9188985 ~ 9189524 (-) | True | G384008 |
| XM_026921505.2 | mRNA | downstream | 95247 | 8837678 ~ 8839745 (-) | True | timm8b |
| XM_026922045.2 | mRNA | downstream | 159750 | 8755639 ~ 8775242 (-) | True | adamts15a |
| XM_026922078.2 | mRNA | downstream | 344465 | 8580097 ~ 8590527 (-) | False | c27h11orf53 |
| XM_034300907.1 | mRNA | upstream | 12029 | 9020715 ~ 9070259 (-) | True | ubash3ba |
| XM_026922452.2 | mRNA | upstream | 65078 | 9073764 ~ 9084084 (-) | True | f11r.1 |
| XM_026922306.2 | mRNA | upstream | 81041 | 9089727 ~ 9101289 (-) | False | usf1l |
| XM_026922307.2 | mRNA | upstream | 81041 | 9089727 ~ 9101276 (-) | True | usf1l |
| XM_034300489.1 | mRNA | upstream | 96890 | 9105576 ~ 9108781 (-) | True | thy1 |
| TU454858 | other | downstream | 95228 | 8837725 ~ 8839764 (-) | False | timm8b |
| TU454856 | other | downstream | 95258 | 8837679 ~ 8839734 (-) | False | timm8b |
| TU454857 | other | downstream | 95258 | 8837725 ~ 8839734 (-) | False | timm8b |
| TU454625 | other | downstream | 467980 | 8466359 ~ 8467012 (-) | True | G383467 |
| XR_003403254.2 | other | downstream | 586723 | 8338508 ~ 8348269 (-) | False | pdzd3b |
| TU455042 | other | upstream | 28180 | 9036866 ~ 9070250 (-) | False | ubash3ba |
| XR_004577369.1 | other | upstream | 232030 | 9240716 ~ 9255445 (-) | True | LOC113531664 |
| XR_004577368.1 | other | upstream | 232030 | 9240716 ~ 9255175 (-) | False | LOC113531664 |
| XR_003403282.1 | other | upstream | 673921 | 9682607 ~ 9682733 (-) | True | LOC113531680 |
| XR_003403284.2 | other | upstream | 674295 | 9682981 ~ 9683105 (-) | True | LOC113531682 |
