RNA id: TU101870


Basic Information

Item Value
RNA id TU101870
length 3967
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G85778
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 20003056 ~ 20007022 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTTTAATATAGTCTTTAATCAACTGAGTAATGCAGGGTTGTACAGCAAGCTTTATTTCTAAATGGCATTAAAACATATATCTTTTTGAGTAGACTAAACTGAGTAgttatttgttcttttctcaaAGCGCTTACTTTACAAGCTGCAATAGAAAACATTTcagtggcttttttttgttgcaatAATCTCAGCCACGGATCTCAGTGGAGCCATTAGCATCGGTATGAATTCGATGactgaaaaaggaaacaaaacaaaacaaaacagcagcccATCATGAACAAATACTTTCCATTCTCTCTTATACATACACAAAGAAAATCTGTAATTCTAGTTTCTTGATGATAATAAGATGACACACTGCTAAATTTTTGCATGCCTGAATTTGAAGAGCTGCAGTGGTTGTTGGGACTAATGaaacagcacattttctttttgctttcagTGATTTTGGAgatgaaaaaatcaatataaaaatgCTTGATTAGACTTCCACTGTGGTTAATATTCATGTGGTATAAATGGGAACAGTTCAGATGATGACATGGTTTGTTATAAAATACACATTGCCTGTGTTTACTTTAAATTTTTAGAAATGAACAGAGTTTGAATGTGACAATCTCATTGCCAAAGCTGCCATGTTTCCTCTAGAGAAGTAATCATTAACCCTCTTTCTAAACATCACACCTTCTTCAGTTACAGCCCTAATCCAGCACAAGTGCACCATGTAATCAGTTTACTTGATTAGCCGGATCAGCTCAGCTGGATTAAGGTTGGAACAGAATTCTTTAAGAAGGAACATCTCCATGAACCGGGTTTGTTTTTACTGCTCTAGAGTACAACACAGGGTGTAAAGGCTGGCAATTAATGAAATCACGAATAACGAAAAACGAGATCATGTTCTAAGGTGACCTGGGctaactgaattttttttttttttaaaagcactaaATTTAAtgagtacaaaacacacacaggttttgAGTCTAATCAGCATTGCACATGGGCACCTGTAAATGTTAATCATTTAGCAACATGCTGTAAAAAGCAGTGACATAATTCAATAAGAAGACCAGAAGTTTGACGCAAACACATTCTGCATCACTAATCCTGCAGGCTAAATATAGTTTAAGGTCATCATTTCAGTAATTGAGAACTAAGGGCCTAGGAATAAAATAAGTCACTTATTTGCCTTTCTACAGGGGTAATTGCTTCTGTTTGGCTTGAGAAGGAAATGGCATGTACATAAACTTAGTAATATCTGTCTGAAATAACTGTGCTATTTTATCCAGAGATAAATATCACAGTGTTACAACATTGTTCTTGGTCCCACAGCAACAGTTGAGCATTCTGTATATGTGCAAGCAAAAGCACGCTATACAGATATATTTACACCACATTGGTGAACctattttacatacatacaaaactAAGATTTCAGCTTCATCAACTGGGACAGAGGAAGTGAAAGAGATACTTTTTGTGAATAATAAATTTGTCAGTGAATGTTTCTGTTGCACAGTCCAGTTCAGAAAACGCATAGTCCAGTGATTAAACTGGCATGAGATAAGTGGCACATTCTTCACTTAAGAGCATAACTGAAAATTCACACAGCATACATTTAGCTAGTTGTGCATTTTAAGTCAGTCTCTATAAGGGCGAGTTTTGCTTTGCAGTATGAGAGGTTTTCCCATAACGGAGCATCACTATGTAATTATTTGAATGGCTCATGTCTGAGCCTGCAAAATGCATCAGTAATTGTGGgcgaaggaaaaaaaaaaaaaaaaggtaaactcctcaactgtatatttaaaatgaagacGAGTTCAAtaaattgtgtgatgcaatgtTTTACATACAGCAATTATTAATAAGGGTAAGTGTAGTGGCACTGAAATTTTGTGTAGTTTGCCAGGATTATCTGGCAACATTTGTTCAAACTGCTCATACACATGAATGACACTGAAGCACAGGGATGGATGACAGTGCAACCCTTAAACTACCAACAAACTCAAAAGGGACGcaatatatcatgatattcattagaataatataatagaacatttaaaaaagtatctGGACATACAGCCTTGAGGTTTGGCCCTTGGCACtgttaaaaaaagggaaataaaaccACATAAAAACTCGATTCTGAAGTAACAGCTGTGTATATGCATCATCATGTGCATATGTATCATTGATCTAGACTCAGCTTCCCTCTTACAGTATGATTGTATGcataatgaaatgaaagctaGCCATCAGTTCAAGATTACTCTGATATCTGAGACATGATCATGACCATAATTGACCATATTTGTCATTTCAGTACAGCTTTCATAAACAGAGGTTTAAAAAGAACTGAAGTAGCTgtaatacacacaataatgtACACATTTAGTTCCAGCTCTATGTAGTGTAACATTAgatataaattacatttgaaGTACATACTTGGTGTCCGTGGTTTTGACTGGAATGCAGAGAGCAACACCTAACCTAAGCCATTTGTCCATTTCCTCATACAAGTCCTCTGCAGAAGTATCAAGTCATAGGTCACATCTGATCTAGTGCTCTCACACAGATCCTTATGCAGAGTAATGCATCAGACTAATAATGTAGACACACTCATGTAGATCCACACTTGCAGAAACCAGGTCCACGtcttttcaaaacaaataaaagagtGAAGTATGTACTTCTGTGTCTGCTGAAAAGGGAGAACATTATTCCAGAGATCAGACTGAGATTGATTCAGATTGTAACAGAATTGAAAATCCTCCATCCTTCACGCTTGCATCTTTTCAACTGTCCTCTGTTGTTGTGCACCTCCAACAGGGgagaaaaacatacacacacacgcccgAAAATCATTTTACCTTTCCCTCTCAGGATTGTTGGGATTGATAAGAAGGGATTGTCATCCATAAGATGTTTCTTAACTGCAGACAGTGGTGGTTAAAAAGATAAGTGCACCATTTAGTTTACaatattatgttaataaaaatggaaaacgCTGCAAAACATAGGACAAAATTAAAAGTATTGAAGAGCACCTCAAAGCTAAAGCCTATTGCACATTTCAGAATGTAATACAAAAATGGGGGatacatgtatatattacatacaacaAATGCTTGAATGTACTATGCATAAAACATAACAGATGCTATTGCAGTCAAAGATCTTAGAGACCACTGCGTTTTCTATCAACTTTTATATGGACTTAATTTCATTTATGTCCATATGAGCATTCTAGCATGATTGTTAAATCAAtaaattgtcattttcttttttccccattttttttttttttttaaagttttaagaCCAGATTTAAACAAGGTCCAAGAAATCAGACATAACTATGAGATTAAGATcatgattataaaaaaaagtgcaacaaATACAAGAAAGTAATTATCAGACAACCAGACACACAATCATACTTTGATTTACAACAGGACAACATAACTAATGGAAGCATTTTAAGCCAATGATGCTGCATAGCTGGGTTCGGTTTAAAGCAATTacttcagaaaaacaaaaaaaaaataataaaaggtcAGAGAATTTCAAGAAATACCACGATGTTAAGTGCTTGCAAATCGTATCTTAGAAAACTGTTTTCTCTTCCTCCTATAACATGCTGCCAAACCCTCCAGTATCAATAAGCTGCTTGTGGCCGTTTCTCAGCAGGGTAAAAGTTTATAGGCAGGTTGGGTCAGAGGAGAGAGTTGCCGTGGCAGTTCCCCCTCCGACCAGGAACACAGCAGTGCTGGATTTAGAGCGAGTAGCGCCTGCTGCACCCTGCCCTCCACCTGCCCCGTTGTTGTTGACCTCTCCATCCAACGTATCCGTAGAGATGACCCACGTGGAGGGGCGCCACCGCTTCAACGAATAAGGCGTCTTCACACGTCTCTTTATCTTCTCAGCTGATGCAGCTTTTCCCTCCTGAGAGAAGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101877 lncRNA downstream 2624 19999151 ~ 20000432 (-) True G85785
TU101873 lncRNA downstream 10300 19992527 ~ 19992756 (-) True G85781
TU101876 lncRNA downstream 19944 19982753 ~ 19983112 (-) True G85784
TU101874 lncRNA downstream 26449 19975405 ~ 19976607 (-) True G85782
TU101866 lncRNA downstream 52348 19949591 ~ 19950708 (-) True G85774
TU101871 lncRNA upstream 251 20007273 ~ 20009154 (-) True G85779
TU102080 lncRNA upstream 387449 20394471 ~ 20395729 (-) False abcb6b
TU102081 lncRNA upstream 387802 20394824 ~ 20395729 (-) False abcb6b
TU102117 lncRNA upstream 476147 20483169 ~ 20509623 (-) True G85978
TU102408 lncRNA upstream 793267 20800289 ~ 20800550 (-) True G86260
XM_026912620.2 mRNA downstream 84973 19904974 ~ 19918083 (-) True actr3
XM_026912665.2 mRNA downstream 126061 19786091 ~ 19876995 (-) False LOC113525964
XM_026912666.2 mRNA downstream 158695 19786091 ~ 19844361 (-) True LOC113525964
XM_034304558.1 mRNA downstream 300408 19692961 ~ 19702648 (-) True ddx18
XM_026912320.2 mRNA downstream 322369 19675915 ~ 19680687 (-) True insig2
XM_034304628.1 mRNA upstream 41769 20048791 ~ 20077583 (-) True LOC113525902
XM_026912558.2 mRNA upstream 73236 20080258 ~ 20083368 (-) True fzd7a
XM_026912910.2 mRNA upstream 232077 20239099 ~ 20266541 (-) True raph1a
XM_026913085.2 mRNA upstream 337901 20344923 ~ 20359284 (-) True fer1l6
XM_026913086.2 mRNA upstream 338422 20345444 ~ 20359285 (-) False fer1l6
TU101560 other downstream 429593 19568751 ~ 19573463 (-) False steap3
TU101475 other downstream 515317 19481120 ~ 19487739 (-) True grb14
TU99754 other downstream 2963213 17028307 ~ 17039843 (-) False mettl8
TU99188 other downstream 3782190 16219964 ~ 16220866 (-) True G83554
TU98290 other downstream 4925861 15063425 ~ 15077195 (-) False dcaf6
TU101958 other upstream 219706 20226728 ~ 20237615 (-) True G85848
XR_004578271.1 other upstream 1129024 21136046 ~ 21144621 (-) False phgdh
XR_004578270.1 other upstream 1129024 21136046 ~ 21144621 (-) True phgdh
TU102877 other upstream 1292865 21299887 ~ 21305100 (-) False dhrs9
TU102903 other upstream 1450713 21457735 ~ 21459330 (-) False LOC117597354

Expression Profile