RNA id: XM_034308673.1


Basic Information

Item Value
RNA id XM_034308673.1
length 4552
RNA type mRNA
GC content 0.51
exon number 25
gene id adgrl2a
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 19101740 ~ 19196346 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtgtgtgtgtgtgtgtgtgtatgtgtgtgcgcgcgcgcgcgcgagcTCTGCCTTCCTCACCTTTTCGGAAAGCTGCTCTTCCCGCGACGAACCTTCGGCAGCTGAACGGCAGGAATTCACCGCGAATAAAAGCCGTTCTGACTGACTCACAGCACAGAGGAGCCGTTTCCCTCCACAAGCCGGGCTTTCtctttggtttattttatttttttaaattatacacacacacatatatatacacacgtctttttcttttgctgtttgtttatttaaccaCAGTTGCCGAAGAGGACAGGGTGCCGTTAGCTGGCCGGTGCCGGTGCCGGTGTTGTCCCTCCTCTCACCGCCACCGGGCTTCCACTTGTCCGCATCTTTCTGTTGACTTTGAGAAGACCGGGAAGTCAGAAGTGAGTGAGACTTTACGCGGAGAgagttcaacacacacacagagaaaagagagagagagagagagcggggtTACCGCTCACGCCGCGGGTCCGTCTCCCCTCACACTGGCGTTAGCTGAGCATGCACCGCCGCCTCGCAGCTCTTCACACCGGAGCAGCTCCTTCTGCCTCCTCTGTCCGCTCCGACACACACTTCTGAAACTCAGCCACAGGTGCAGACCCTGAAGATGAGCGTCTTTGGGATGATTTCTCACGTGTCGTTGTGACTCCAGTGACTTTCGAGCAAGCATGAGGAGAGTGCCCAAGCCAAGCACAATGGCCTGTTCAGTGTGGAGTCTCCCAAGCCTCCGTTGCCTGATGTTCGCTTTGGCTGCTCTACAGTGCACTGAAGGCTTCAGTCGGGCAGCACTGCCGTTTGGTTTAGTCAGGCGGGAGCTGTCCTGCGAGGGCTACCCAATTGACCTGCGCTGtccaggaagtgatgtcatcatGATTGAGAGCGCTAATTACGGGCGCACGGATGACAAGATCTGCGATGCCGACCCCTTCCAAATGGAAAATATCAACTGCTACCTCCCTGATGCCTACAAGATAATGTCCCAAAGGTGCAATAATCGAACCCAGTGTATTGTCATTACGGGATTGGATGTCTTCCCTGACCCTTGCCCAGGAACTTACAAATACCTTGAGGTCCAGTATGAATGTGTCCCTTATAAAGTGGAGCAAAAAGtttttgtttgtcctgGAACTCTGAAAGCTGTCGGAGATCCTTCCTTTCTGTACGAGGCGGAGCAGCAAGCTGGTGCCTGGTGCAAAGACCCTCTTCAAGCAGGGGACAAAGTTTATTTCATGCCCTGGACGCCGTACCGCACCGACACACTGATCGAGTACTCGTCGCTTGACGATTTTCAGAACTCCAGACAAACCGTAACATACAAACTTCCCCATCGAGTGGACGGCACCGGATTCGTGGTGTACGACGGCGCTGTGTTCTTTAACAAGGAGAGAACACGCAACATTGTGAAGTTTGACTTGCGCACACGAATCAAGAGCGGcgaggccatcatcaacaacgcCAACTACCATGACACGTCGCCATACAAGTGGGGCGGCAAGACGGACATCGACCTGGCTGTGGACGAGAACGGCTTGTGGGTGATTTATGCCACTGAGCAGAACAACGGCATGATGGTGCTGAGCCAGCTGAACCCATACACACTGCGCTTCGAAGCGACGTGGGAAACGACATACGACAAGCGCTCAGCCTCTAACGCCTTTATGATCTGTGGTGTGCTCTACGTGGTCCGGTCCACATACGAGGACAATGAGAGTGAAGTGAGCAAAGGCGTCATCGATTACATGTACAACACTAAGCAGGGCCGTGGTGAGTACGTGGACATTCACTTCCCCAACCAGTACCAGTACATCGCCGCCGTGGAGTACAACCCCAGGGACAACCAGCTCTACGTGTGGAATAACTTTTACGTTCTGCGCTACAACTTGGCCTTTGGACCACCCGATCCAGCTCACGcccCGCCTATCTCAGATGCCACCTCAGTGCCAGCACCACCCCGAATGACTACCAccacaatgacaacaacaacagcacagCATAGAGGCCTAACAACAACCATAAACACTACAGGGACCAGGGTCGGCAACAAGCCCCCTAAACCCCCAGTGGCTCCGTCCCGAACTACCACGCCTCCGTCCCTGGAGTCGTTCCCTTTGCCCAAGCGCTTCTGTGACAGTGTAGAGCGAAGGGACATCCTGTGGCCTCAGACACAGAGGGGCATGCTTGTGGAACGACCATGTCCCAAAGGAACTAGAGGCACTGCCTCCTACCTGTGTGTCCTCTCCACTGGGGCCTGGCACCCAAAAGGCCCTGATCTAAGCAACTGCACCTCTCACTGGGTCAATCAAGTGGCTCAGAAGATCCGGAGTGGGGAGAATGCGGCCAACCTGGCCAACGAGCTAGCTAAGCACACCAAAGGGCCCATCTTCCCCGGCGACATCAGCTCCACCATGAGGCTCATGGAACAGCTGGTGGACATCCTGGATGCCCAACTACAGGAGCTGAGGCCAAGCGAAAAGGATTCTACCGGACGGAGCTTCAACAAGgttcAAAAGCGAGAAAGGACATGCAGGGCATATATGAAGGCGATTGTCGATACCGTGGACAACCTGCTTCGGCCAGAAGCACTGAAGTCTTGGAGAGGCATGAATATCACAGAGCAGACTCATGCTGCCACCATGTTACTGGACACTCTCGAAGAAGGAGCCTTCGTCCTTGCTGACAATCTGATGGAACCAGCAATAGTGAAAGTGCCAGCTAGCAATATAAtCCTGGATGTGTATGTGCTGAGCACAGATGGCCAGGTGCAGGACTTCAAGTTTCCCCAGAGCAGCAAGGGGGGTATATCTATCCAGCTGACAGCCAATACAGTTAAACTAAACAGTCGGAAtgGTGTTGCCAAGTTGGTGTTCGCTCTGTACAAAAACCTGGGCCAGTTCCTGAGCACTGAGAATGCAACAATCAAACTGGGCAGTGAGATGAATGGCCACAACCTCACCGTGGCCGTAAACTCAGATGTCATTGCTGCCTCAATCAACAAGGAATCCAGTCGAGTCTATATAACTGAGCCAGTGATTTTTACCCTGGAACACATTGATatgcAACACTATTTCAACTCAAACTGCTCCTTTTGGAATTACTCAGAAAGGAGCATGATGGGATACTGGTCCACTCAAGGCTGCAAGCTTGTTAAGTCCAACAAAACCCACACAACCTGCTCGTGCAGCCATCTAACAAATTTCGCCGTCCTTATGGCTCATCAGGAAATACTGGGCCCAGGCAGAGAGCACAAGCTGCTGCTGACGGTCATCACTCGCGTGGGCATTGTGGTCTCACTCGTCTGCTTGGCCATGTGCATCTTCACATTCTGCTTCTTCCGTGGCCTGCAGAGTGACAGAAACACCATCCACAAGAACCTTTGCATTAACCTCTTCATTGCCGAACTCCTCTTCCTAATTGGCCGCAGTGTGACAGAACACAGGATTGGTTGTGCGATCATTGCTGGGATCCTGCATTATTTCTTCTTGTCTTCTTTCGCTTGGATGTGTTTGGAGGGAGTTCATCTCTATCTTATGCTTGTGGACATCTTTGAGAGTGAATATTCACGGAAGAAATATTACTACGTTTCGGGCTACCTGTTTCCCGCCATCATCGTGGGCGTGTCTGCGGCTGTGGATTATGGGAGTTATGGAACAGAAAAAGCATGCTGGCTGAGATTGGACAACCACTTTATTTGGAGTTTTATTGGACCTGTTACTTTCATCATCATGCTTAATCTCATCTTCCTGGTCATCACAATATACAAAATGGTGAAGCACTCTACTTCATTGAAACCAGACTCCAGCAGGTTGGaaaatataaaGTCCTGGGTTCTAGGAGCGTTTGCTTTGCTATGTCTTCTGGGTCTTACCTGGACCTTCGGTTTGTTATTCATCAATAGCGAGTCCGTCGTGTTGGCCTATCTCTTTACCATTTTCAACACCTTCCAGGGCatgttcatcttcatcttccaCTGTCTGCTTCAGAAAAAAGTTCGTCGAGAGTACAGCAAATGCCTTCGCCACACATCTTGTTGCAGCAGCTTGCCAAGTGAGAGCTCCCACAGTTCCACAAAGACAGCAACAACAAGGACAAGTGCTCGCTACTCCTCTGGCACTCAGAGTCGAATCAGAAGAATGTGGAATGACACTGTAAGAAAGCAATCTGAATCCTCCTTTATCTCAGGGGACATCAACAGCACATCAACCCTCAACCAAGGAATGACGGCCAATTATCTACTAACAAACCCTCTTCTACGACCCCAAGGCACTAACAACCCGTACAATACCTTACTGGCCGAAACGGTCGTATGTAACACTCCTACGGCTCCTGTCTTTAATTCTCCAGCGACCTACAGAGAGACAAGTATGGGAGTAAAACTTAACTTTGCCTatcaaatCTACTCTTAGGCCAGATAGCCTGAACAGACAGACATGATGACACTCAATGAACAATGCCAGGGATACAAGTGCAATGGATACTCTACCGCTAAATGGTAACTTCAATAATAGCTACTCGCTTCGGAACGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003402754.2 lncRNA downstream 53143 19034294 ~ 19050477 (-) True LOC113526295
TU218078 lncRNA downstream 142766 18959249 ~ 18960854 (-) True G184255
XR_003403144.2 lncRNA downstream 154994 18940102 ~ 18948626 (-) True LOC113530379
TU217596 lncRNA downstream 1205267 17898146 ~ 17898353 (-) True G183826
TU217579 lncRNA downstream 1224211 17879205 ~ 17879409 (-) True G183809
TU218279 lncRNA upstream 25238 19220825 ~ 19271310 (-) True G184439
TU218304 lncRNA upstream 109725 19305312 ~ 19310955 (-) False G184463
TU218305 lncRNA upstream 109725 19305312 ~ 19313395 (-) True G184463
TU218306 lncRNA upstream 109725 19305312 ~ 19310955 (-) False G184463
TU218309 lncRNA upstream 120532 19316119 ~ 19316363 (-) True trnav-uac_6
XM_034308840.1 mRNA downstream 195157 18893868 ~ 18908463 (-) True prkacba
XM_026922298.2 mRNA downstream 195159 18893868 ~ 18908461 (-) False prkacba
XM_026922290.2 mRNA downstream 201350 18893868 ~ 18902270 (-) False prkacba
XM_026918132.2 mRNA downstream 214945 18877148 ~ 18888675 (-) True samd13
XM_034308700.1 mRNA downstream 232522 18867648 ~ 18871098 (-) True dnase2b
XM_026919367.2 mRNA upstream 223097 19418684 ~ 19423950 (-) True lsm4
XM_026919538.2 mRNA upstream 228486 19424073 ~ 19429693 (-) True ddx49
XM_026929313.1 mRNA upstream 269054 19464641 ~ 19475095 (-) True comp
XM_026934149.2 mRNA upstream 281233 19476820 ~ 19483819 (-) True tmem38a
XM_026922017.2 mRNA upstream 465478 19661065 ~ 19664681 (-) True gamt
TU216998 other downstream 1761377 17245772 ~ 17342243 (-) False zgc:172076
TU216003 other downstream 2824763 16275866 ~ 16278857 (-) False micos13
TU216001 other downstream 2824811 16274882 ~ 16278809 (-) True micos13
trnav-uac_1 other upstream 114424 19310011 ~ 19310083 (-) True trnav-uac_1
trnav-uac_2 other upstream 116224 19311811 ~ 19311883 (-) True trnav-uac_2
trnai-uau_3 other upstream 116598 19312185 ~ 19312256 (-) True trnai-uau_3
trnav-uac_3 other upstream 116785 19312372 ~ 19312444 (-) True trnav-uac_3
trnav-uac_4 other upstream 117909 19313496 ~ 19313568 (-) True trnav-uac_4

Expression Profile