Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU372656 |
| length | 315 |
| lncRNA type | sense_over |
| GC content | 0.60 |
| exon number | 1 |
| gene id | pou3f2b |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047615.1 |
| NCBI id | CM018561.1 |
| chromosome length | 21248730 |
| location | 4787848 ~ 4789835 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU372650 | lncRNA | upstream | 7955 | 4779938 ~ 4780145 (+) | True | G314609 |
| TU372431 | lncRNA | upstream | 26005 | 4688969 ~ 4762095 (+) | False | LOC113543063 |
| TU372416 | lncRNA | upstream | 260280 | 4517601 ~ 4527820 (+) | True | G314404 |
| TU372412 | lncRNA | upstream | 403235 | 4379637 ~ 4384865 (+) | True | G314402 |
| TU372366 | lncRNA | upstream | 493026 | 4294865 ~ 4295074 (+) | True | G314364 |
| TU372673 | lncRNA | downstream | 12238 | 4800652 ~ 4801103 (+) | True | G314628 |
| TU372681 | lncRNA | downstream | 57778 | 4846192 ~ 4846717 (+) | True | G314636 |
| XR_004580298.1 | lncRNA | downstream | 95796 | 4884210 ~ 4893278 (+) | True | LOC117599956 |
| TU372728 | lncRNA | downstream | 189607 | 4978021 ~ 4978966 (+) | True | G314675 |
| TU372866 | lncRNA | downstream | 334284 | 5122698 ~ 5123402 (+) | True | G314785 |
| XM_026941049.2 | mRNA | upstream | 95284 | 4592445 ~ 4692816 (+) | False | LOC113543063 |
| XM_026941051.2 | mRNA | upstream | 95529 | 4592441 ~ 4692571 (+) | True | LOC113543063 |
| XM_026941052.2 | mRNA | upstream | 99078 | 4592442 ~ 4689022 (+) | False | LOC113543063 |
| XM_026941235.2 | mRNA | upstream | 197144 | 4583027 ~ 4590956 (+) | True | bud23 |
| XM_026940916.2 | mRNA | upstream | 211452 | 4546135 ~ 4576648 (+) | False | LOC113543006 |
| XM_026941103.2 | mRNA | downstream | 113056 | 4901470 ~ 4958121 (+) | True | LOC113543089 |
| XM_026940941.2 | mRNA | downstream | 243835 | 5032249 ~ 5036445 (+) | True | LOC113543019 |
| XM_026941160.2 | mRNA | downstream | 271616 | 5060030 ~ 5070433 (+) | False | rabgef1l |
| XM_034314758.1 | mRNA | downstream | 271761 | 5060175 ~ 5070433 (+) | True | rabgef1l |
| XM_026941161.2 | mRNA | downstream | 282204 | 5070618 ~ 5073139 (+) | True | LOC113543113 |
| XR_004580320.1 | other | upstream | 95284 | 4592440 ~ 4692816 (+) | False | LOC113543063 |
| trnap-ugg_21 | other | upstream | 841094 | 3946935 ~ 3947006 (+) | True | trnap-ugg_21 |
| trnas-aga_16 | other | upstream | 1159987 | 3628032 ~ 3628113 (+) | True | trnas-aga_16 |
| trnas-aga_14 | other | upstream | 1162070 | 3625960 ~ 3626030 (+) | True | trnas-aga_14 |
| trnas-aga_13 | other | upstream | 1162603 | 3625416 ~ 3625497 (+) | True | trnas-aga_13 |
| TU372694 | other | downstream | 148634 | 4937048 ~ 4958120 (+) | False | LOC113543089 |
| TU372695 | other | downstream | 148634 | 4937048 ~ 4958120 (+) | False | LOC113543089 |
| TU372696 | other | downstream | 148634 | 4937048 ~ 4958120 (+) | False | LOC113543089 |
| TU372849 | other | downstream | 299687 | 5088101 ~ 5091097 (+) | False | sptssb |
| trnat-agu_13 | other | downstream | 431131 | 5219545 ~ 5219618 (+) | True | trnat-agu_13 |
