RNA id: XM_034314542.1


Basic Information

Item Value
RNA id XM_034314542.1
length 1372
RNA type mRNA
GC content 0.45
exon number 1
gene id LOC113543329
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 6274739 ~ 6276110 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAACCACATCACCGACTCCAAGGCACTGCTTTTAGTGTGACCACTTCTTATCATCTGCTTCTTGGCAGGTAGTCATCCAGCTCTGGCCAAACACAAAGCAGAAGCCTGAGGAAATAGTGAGCGTCCACGACCATGTCTGCCGGCCTGGAGCTCATTGggattgtgctgtgtgtgctgggaTGGCTCCTGGCCATTGTCTCCTGCGCTCTGCCCATGTGGAGGGTCACGGCCTTCATCGGCAGCAACATCGTGACAGCGCAGATTTATTGGGATGGTCTCTGGATGAGCTGTGTGGTGCAGAGCACTGGTCAGATGCAGTGCAAAGTCTATGACTCCACGCTGGCACTTTCCCAAGATCTCCAAGCAGCCCGTGCTCTCACTGTCATCTCCATCCTACTGGTCATTCTAGCCATGCTGGTGTCCATTGCTGGGGCCAAGTGCACCAACTGCATTGATGACGAATCATCCAAGGCCAAAGTCATGATCGTGGCTGGAGTTCTCTTCCTTGTGGCTGGGCTCATGCAGTTGATTCCTGTCTCCTGGTCAGCTAATACCATCATCAGGGATTTCTACAATCCCTTACTGACCAACCCGCAGAGGTGGGAGCTAGGAGCTTCACTTTACATCGGCTGGGCTGCCACGGCTCTCCTGATAATGGGTGGATCGTTGCTGTGTTGCTCTTGCCCTCCATCCAGGATGACTTATTCAGCTTCCCGCTCTGCAGCTACTGGTGGGTATGACCGAAGAGACTATGTGTGAGTCGGGAAAAGGAAACAAACTGTTTCATGTACTGTTACATGTTCAAGACAAGGGTACAAATGTGCCTTCTCAGACCCTATTATGAAAGAGAACACTGATATTTGATTTGCTGAGCTCTGAAAAAAAGGGCTCATtgtgtaactgtaaaaaaaaatgttaaaatatgatGGCACTGGAGGAGAAAAGCATTTCACAATGGACTAGGGAAAACTTAAATAATTGTTTTCATACTTTCTactattttatgtatttttatttcaaggAATTCAAAAAGTATTCAGtattttaatacactttataATTTTTATGATTGCTTTAGCTTTCAGAAGAAAAGCTGACATCTAATGTAAAAACAGTTATGCATATGTCTGTACATTGTAGCTAGCCTTATAAAAGGGACCTTGTGGTGCAGAAGAGTGGGAAGAAAGCCAGGAGGTACAAAGTGAACAGCTCATTGTGTGCAGTGAAGCAGAGAGGAACATTTGTATCAAGCTGTTCCTATACTGAAAACCACTCTCCTGCCGTATGCATGGCACTTTATTTTCATGCTCTGATGATACAGATTGAAGgtttgtattgtatatatataaagtgttcaTGTAATATCATGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU373749 lncRNA upstream 22070 6251434 ~ 6252669 (+) True G315591
TU373751 lncRNA upstream 22070 6251471 ~ 6252669 (+) False G315591
TU373750 lncRNA upstream 22117 6251434 ~ 6252622 (+) False G315591
TU373748 lncRNA upstream 22117 6251471 ~ 6252622 (+) False G315591
TU373739 lncRNA upstream 40476 6232601 ~ 6234263 (+) True G315583
TU373835 lncRNA downstream 123630 6399740 ~ 6399979 (+) True G315647
TU373836 lncRNA downstream 127292 6403402 ~ 6403601 (+) True G315648
TU373838 lncRNA downstream 130012 6406122 ~ 6407755 (+) True G315650
TU373863 lncRNA downstream 199579 6475689 ~ 6475893 (+) True G315665
TU373858 lncRNA downstream 229830 6505940 ~ 6506686 (+) True G315660
XM_026941336.2 mRNA upstream 6865 6266493 ~ 6267874 (+) True LOC113543241
XM_026940835.2 mRNA upstream 8329 6263628 ~ 6266410 (+) True LOC113542971
XM_026941443.2 mRNA upstream 50325 6217438 ~ 6224414 (+) True sbds
XM_026940946.2 mRNA upstream 127649 6140585 ~ 6147090 (+) True LOC113543022
XM_026941237.2 mRNA upstream 136338 6124611 ~ 6138401 (+) True cul3b
XM_026941079.2 mRNA downstream 107900 6384010 ~ 6399285 (+) True LOC113543080
XM_034314660.1 mRNA downstream 107915 6384025 ~ 6399285 (+) False LOC113543080
XM_034314662.1 mRNA downstream 107916 6384026 ~ 6399285 (+) False LOC113543080
XM_026941081.2 mRNA downstream 108090 6384200 ~ 6399285 (+) False LOC113543080
XM_026941078.2 mRNA downstream 108090 6384200 ~ 6399285 (+) False LOC113543080
TU373737 other upstream 47499 6226717 ~ 6227240 (+) True G315581
TU373444 other upstream 377909 5894504 ~ 5896830 (+) False shox2
trnat-agu_13 other upstream 1055121 5219545 ~ 5219618 (+) True trnat-agu_13
TU372849 other upstream 1183642 5088101 ~ 5091097 (+) False sptssb
TU372696 other upstream 1316619 4937048 ~ 4958120 (+) False LOC113543089
XR_004580329.1 other downstream 661230 6937340 ~ 6944608 (+) False LOC113543138
TU374286 other downstream 857349 7133459 ~ 7135501 (+) True G316001
TU374748 other downstream 1419424 7695534 ~ 7695919 (+) True G316413
TU375134 other downstream 1987229 8263339 ~ 8264061 (+) True G316744
TU375135 other downstream 1992599 8268709 ~ 8269198 (+) True G316745

Expression Profile