RNA id: XM_026941443.2


Basic Information

Item Value
RNA id XM_026941443.2
length 1780
RNA type mRNA
GC content 0.41
exon number 5
gene id sbds
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 6217438 ~ 6224414 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggcagtgtgGGGTTTAGGCGGCGCAGGCTCACCGACTTAACGCtcataagaagaagaagaaagaaacgCCTGTCACATTTCTACGAGCAAACAAAAATGTCGATATTTACACCCACAAATCAGATTCGCCTGACAAACGTGGCGGTCGTGAGGATGAAAAAGGGAGGGAAACGATTTGAAATAGCGtgttacaaaaataaagtgATGAGTTGGAGATCGGGAGCAGAGAAAGATCTGGATGAAGTtctccagacacacacagtgtttataaaCGTGTCAAAGGGCCAAGTGGCGAAAAAGGACGATCTGTCAAAAGCGTTTGGAACAGATGACTTAACAGAAATATGCAAACAGATTTTAGCCAAAGGAGAACTTCAGGTGTCTGATAAGGAGCGACAGAATCAGCTAGAGCAGATGTTCCGGGACATTGCTACAATTGTGGCTGAGAAATGCGTAAATCCAGAAACCAAGCGCCCTTATACAGTGAGCCTGATAGAAAGAGCCATGAAGGACATTCACTACTCTGTCAAAGCCACTAAGAGCACAAAACAGCAGGCACTTGAAGTGATCAAACAGTTGAAGGAATCCATCCAGATTCAGAGAGCTCACATGCGCCTCCGCTTCATCCTGCCAGCTAAAGACGGGAAGAGGCTGAAAGAGAAGCTTAAACCCCTCTTAAAGGTGGTGGAGAGTGAAGACTTCGATGATCAGCTGGAGATGGTTTGCTTGATAGATCCGGGCTGCTTTCGGGAAATCGATGAGCTGATTCGCTGTGAGACAAAAGGCAAAGGGTCGGTGGAGGTGCTCAGCCTGAAAGATGTGGAAGAAGGCGATGAGAAACTCGAATAACCCGTCCTGTACCTGCCTCCACACGCCACCTGCCACACTAACTACTTCCACATTaaattatttctctcttttatgtATCAAAGACTGTATAAGTTGATGTATATTACAGGGAACTGGATTTAATGAAGCCTTAAACAGCATTTGTTGAAGTTTCTAGCTTGTGacacagccttttttttaatggaccAGTAATTATAATAGTTTAGGCATATTTACTGTTTGAGGTTTCAGTAAATCTTCCCAAACGATTTATCCATGACTCCTAAATAATAGTGAGCAAATTATTAATCTAACTCAAATCACAACTAAGGGGTTTGTTTTCTGTGAAAATTGAAGTGATTTGTATGACTGCAAGACAGGCAACCaattgatttattaaaataaatacaagtatACATGCAATGTGCATCATAGGAAAACATAGAAATACATAGATCCCGAAGAGAGAAGTTTTCCCTGCCCCTTCCACCTCATGCCATGCCACTGTCTTgacttaaaggtgcagtttgtaatatttaaaattgtttgtaaTACTCATATCATGTCCAAGATTCCCCCCCAAAAATTTGTCATGTGGTGAATCTGGcaagtttcttcatttcaggcttctgtttacatttttatggcACAGAAATTATCCCTTTATTTTTTCGAAAGGCAAGGAGACATGCAAAGGTTTAACAATTGATACGAGGTCAGTTGGGAAGAACGGGAAAGCTTCAGCTTGCAGTTCTCATCACAaccagcagagggctctaaataTTACAACCCGCTCCTTTAAGATTTTTCCCTGCACCCATCTAACCCTTTCAGTGTCCACTTAGTCTAGTTTGCCTTCTCAGATTTGTGCCATATATCTGACTTGCAACAAAGCTTATCCAAAATCAGGATACCAGTGtacaaaaaaagtgcaaataaaaatgaatgtaaa

Function

GO:

id name namespace
GO:0042254 ribosome biogenesis biological_process

KEGG:

id description
K14574 SDO1, SBDS; ribosome maturation protein SDO1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU373594 lncRNA upstream 39385 6177454 ~ 6178053 (+) True G315454
TU373443 lncRNA upstream 315872 5900630 ~ 5901566 (+) False shox2
XR_004580354.1 lncRNA upstream 475084 5741742 ~ 5742354 (+) True LOC117599998
TU373059 lncRNA upstream 605675 5611559 ~ 5611763 (+) True G314969
TU373044 lncRNA upstream 629519 5587702 ~ 5587919 (+) True G314954
TU373735 lncRNA downstream 345 6224759 ~ 6225767 (+) True G315579
TU373736 lncRNA downstream 1557 6225971 ~ 6226670 (+) True G315580
TU373740 lncRNA downstream 6162 6230576 ~ 6231579 (+) True G315584
TU373739 lncRNA downstream 8187 6232601 ~ 6234263 (+) True G315583
TU373749 lncRNA downstream 27020 6251434 ~ 6252669 (+) True G315591
XM_026940946.2 mRNA upstream 70348 6140585 ~ 6147090 (+) True LOC113543022
XM_026941237.2 mRNA upstream 79037 6124611 ~ 6138401 (+) True cul3b
XM_026941484.2 mRNA upstream 109069 6106002 ~ 6108369 (+) True LOC113543361
XM_026940981.2 mRNA upstream 120976 6033024 ~ 6096462 (+) False dock10
XM_026940835.2 mRNA downstream 39214 6263628 ~ 6266410 (+) True LOC113542971
XM_026941336.2 mRNA downstream 42079 6266493 ~ 6267874 (+) True LOC113543241
XM_034314542.1 mRNA downstream 50325 6274739 ~ 6276110 (+) True LOC113543329
XM_026941079.2 mRNA downstream 159596 6384010 ~ 6399285 (+) True LOC113543080
XM_034314660.1 mRNA downstream 159611 6384025 ~ 6399285 (+) False LOC113543080
TU373444 other upstream 320608 5894504 ~ 5896830 (+) False shox2
trnat-agu_13 other upstream 997820 5219545 ~ 5219618 (+) True trnat-agu_13
TU372849 other upstream 1126341 5088101 ~ 5091097 (+) False sptssb
TU372695 other upstream 1259318 4937048 ~ 4958120 (+) False LOC113543089
TU373737 other downstream 2303 6226717 ~ 6227240 (+) True G315581
XR_004580329.1 other downstream 712926 6937340 ~ 6944608 (+) False LOC113543138
TU374286 other downstream 909045 7133459 ~ 7135501 (+) True G316001
TU374748 other downstream 1471120 7695534 ~ 7695919 (+) True G316413
TU375134 other downstream 2038925 8263339 ~ 8264061 (+) True G316744

Expression Profile