Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU373594 |
| length | 600 |
| lncRNA type | inter_gene |
| GC content | 0.35 |
| exon number | 1 |
| gene id | G315454 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047615.1 |
| NCBI id | CM018561.1 |
| chromosome length | 21248730 |
| location | 6177454 ~ 6178053 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU373443 | lncRNA | upstream | 275888 | 5900630 ~ 5901566 (+) | False | shox2 |
| XR_004580354.1 | lncRNA | upstream | 435100 | 5741742 ~ 5742354 (+) | True | LOC117599998 |
| TU373059 | lncRNA | upstream | 565691 | 5611559 ~ 5611763 (+) | True | G314969 |
| TU373044 | lncRNA | upstream | 589535 | 5587702 ~ 5587919 (+) | True | G314954 |
| TU373013 | lncRNA | upstream | 629262 | 5547889 ~ 5548192 (+) | True | G314923 |
| TU373735 | lncRNA | downstream | 46706 | 6224759 ~ 6225767 (+) | True | G315579 |
| TU373736 | lncRNA | downstream | 47918 | 6225971 ~ 6226670 (+) | True | G315580 |
| TU373740 | lncRNA | downstream | 52523 | 6230576 ~ 6231579 (+) | True | G315584 |
| TU373739 | lncRNA | downstream | 54548 | 6232601 ~ 6234263 (+) | True | G315583 |
| TU373749 | lncRNA | downstream | 73381 | 6251434 ~ 6252669 (+) | True | G315591 |
| XM_026940946.2 | mRNA | upstream | 30364 | 6140585 ~ 6147090 (+) | True | LOC113543022 |
| XM_026941237.2 | mRNA | upstream | 39053 | 6124611 ~ 6138401 (+) | True | cul3b |
| XM_026941484.2 | mRNA | upstream | 69085 | 6106002 ~ 6108369 (+) | True | LOC113543361 |
| XM_034314696.1 | mRNA | upstream | 80992 | 5995489 ~ 6096462 (+) | False | dock10 |
| XM_034314699.1 | mRNA | upstream | 80992 | 5995489 ~ 6096462 (+) | False | dock10 |
| XM_026941443.2 | mRNA | downstream | 39385 | 6217438 ~ 6224414 (+) | True | sbds |
| XM_026940835.2 | mRNA | downstream | 85575 | 6263628 ~ 6266410 (+) | True | LOC113542971 |
| XM_026941336.2 | mRNA | downstream | 88440 | 6266493 ~ 6267874 (+) | True | LOC113543241 |
| XM_034314542.1 | mRNA | downstream | 96686 | 6274739 ~ 6276110 (+) | True | LOC113543329 |
| XM_026941079.2 | mRNA | downstream | 205957 | 6384010 ~ 6399285 (+) | True | LOC113543080 |
| TU373444 | other | upstream | 280624 | 5894504 ~ 5896830 (+) | False | shox2 |
| trnat-agu_13 | other | upstream | 957836 | 5219545 ~ 5219618 (+) | True | trnat-agu_13 |
| TU372849 | other | upstream | 1086357 | 5088101 ~ 5091097 (+) | False | sptssb |
| TU372695 | other | upstream | 1219334 | 4937048 ~ 4958120 (+) | False | LOC113543089 |
| TU373737 | other | downstream | 48664 | 6226717 ~ 6227240 (+) | True | G315581 |
| XR_004580329.1 | other | downstream | 759287 | 6937340 ~ 6944608 (+) | False | LOC113543138 |
| TU374286 | other | downstream | 955406 | 7133459 ~ 7135501 (+) | True | G316001 |
| TU374748 | other | downstream | 1517481 | 7695534 ~ 7695919 (+) | True | G316413 |
| TU375134 | other | downstream | 2085286 | 8263339 ~ 8264061 (+) | True | G316744 |
