RNA id: TU484786


Basic Information

Item Value
RNA id TU484786
length 1813
lncRNA type intronic
GC content 0.42
exon number 2
gene id G408369
representative True

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 5376056 ~ 5377934 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTATACAAATGTGTTGTAGTATACTCTGCATTACTATAaggtactgtactatactataacCTGCTGTATTGTAGTGTGAAATACAGTGCTGTACTGCTGTATATTATGGATTACTATACAGCGTACAATACTAGTGTATTGTTATACTGtgttgtactgtactgtactgtactttttATTAGTCTACCGGACTCCTGGGTGTATTCTACTATTACTCTAGGTCAGATTGTGTACCGTACGGCCTCGGTATCAGTTCTGCTCACTCCGAGGAGCAGACACAAGCTGAGCTAAGCAGACACAGACACTCATAGCAGAGACGGTAGGACTAAATATGGGCCAGACATAGCCTGGGGCTatcccagacacacacacacacacacacacacacacacacacacggtcagtttttctttctcacaccCATCCTTCATACTATGTATCACtgactccacataaacaaacagACGTAAACAGATGCACAAATACACccatgcaaatacacacacacagtttctgaGGAAATCTTTGGGGGAAGCAGTGGTGTCACTGGTCCGTGTTGGCACAAATGACTCATATGCAGCTTGGCTCTGTAATACTGGGTTCCCTCTAAATATAACGTACACACTGCAGTGCACAGGGCACTGaagcgctcacacacacacagacaggaaataAACAGAGTGCAGCGcatgttcaggaaaaaaaaaaatctgtaaaaatccTGCTTAACAGAGTCCCAAGTGATAACGAGCCAGTAAAACTCCGATGCGAGGGTTTTCCCGGTGTTAATTACGGAACGCTTTTTTCGGACAGCTCTTGGGGAATTTATAcaagctttttgttttcttgctctGAATGAATCACGCTTTCACCCTCTGTTGAGGTTTATCCGGTCGAACATACCACAAATATGCACTCAATATCTCCACCCAAACCCCACTTTCACTTAACTCTAATGTTCATTTTGAGTCAGATTGATCCATTTAAAACTTTTACTAATAATGAAAACGAAAACGATTTGACAAATTGAACACTGAcgacaatttttttaaatgggatttttaaaaaaattcttcaaaATTCTTCAACTTTTGCCAGGCTGAAacgtgttatgtttttttttacgaCATCATCAGTCACATGTAGATGTTTGATGACCTCAAAAATATGTTACCTTTCGAAAGGAAAATGGGTTATGATTTTCTTGTAtatagtctggaaaaaaaaaggaaaaaagtgaaaacctAGCAGCAAATGGATGTAATATGACTTTGTGTGTCTATTTcaatacatattgtgtattgctGATAATTGAGATCTTGTATTTAAGGTGTTGCTGTGAAATGAAAACGGTATTGAACAGAATAGGGTTAAATACTCGAGCTGGGAAAGACTGGAACAAAAATTCCACAAGCTCGTGTACCTTGGTGACTCGTTTCATCATCAAATTCTCTGGCCTGCAGCCAACAATAACTTGGCCTGAATGtgcagattgttttttttcccccttgatctgtcttttcctttctctctggaCCGGATTAAAGCACCCGGCTAATTCAGAACAAGCCCGAGCGAACCGGATCGCGGTCATGCCCGAGAAACGTCGACGTGACGTTCCCTGCTGAAGGTTGTTTTCCCGTTCCCTCCTTTTCTCGTTCCCTTCCCCCCCTCCTCTCCCCCTTTCATTCCTGAGGCGCTTGGGAATGAGCTGCACAGTCACTCCAGTCCAGTCCAGCGCCAGAGTGGAAGGTATTTAAAACAATCAGCGGATTCCTGGGAAGAGGATGAGATCATAGCTTCAGAGAGACGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU484780 lncRNA upstream 988 5356138 ~ 5375068 (+) True G408364
TU484774 lncRNA upstream 31994 5343505 ~ 5344062 (+) False map3k7
XR_004577678.1 lncRNA upstream 132381 5223681 ~ 5243675 (+) True LOC113529394
XR_003403047.2 lncRNA upstream 132381 5229869 ~ 5243675 (+) False LOC113529394
XR_004577680.1 lncRNA upstream 165896 5205579 ~ 5210160 (+) True LOC117596620
TU484793 lncRNA downstream 23997 5401931 ~ 5402285 (+) True G408376
TU484795 lncRNA downstream 25533 5403467 ~ 5406051 (+) True G408378
TU484955 lncRNA downstream 227437 5605371 ~ 5605584 (+) True G408531
TU485168 lncRNA downstream 511579 5889513 ~ 5889799 (+) True G408711
TU485271 lncRNA downstream 670632 6048566 ~ 6066515 (+) True G408805
XM_026917981.2 mRNA upstream 32006 5322646 ~ 5344050 (+) True map3k7
XM_026917982.2 mRNA upstream 32006 5322648 ~ 5344050 (+) False map3k7
XM_034302114.1 mRNA upstream 360982 4938498 ~ 5015074 (+) False epha7
XM_026918085.2 mRNA downstream 7414 5385348 ~ 5474398 (+) False bach2b
XM_026918327.2 mRNA downstream 119233 5497167 ~ 5546607 (+) True mdn1
XM_026917866.2 mRNA downstream 170689 5548623 ~ 5557518 (+) True katna1
XM_034301888.1 mRNA downstream 211923 5589857 ~ 5603470 (+) True LOC113529080
XM_026917736.2 mRNA downstream 306142 5684076 ~ 5694444 (+) True lrp11
XR_004577669.1 other upstream 716361 4655964 ~ 4659695 (+) True LOC113529331
XR_003403042.2 other upstream 716361 4655964 ~ 4659695 (+) False LOC113529331
TU483755 other upstream 1494434 3876675 ~ 3881622 (+) False LOC117596542
XR_004577677.1 other upstream 1625865 3672852 ~ 3750191 (+) False tab2
TU485026 other downstream 355861 5733795 ~ 5736261 (+) False lyrm2
trnag-gcc_30 other downstream 364858 5742792 ~ 5742862 (+) True trnag-gcc_30
XR_004577658.1 other downstream 894098 6272032 ~ 6276665 (+) True LOC117596600
TU485379 other downstream 1105167 6483101 ~ 6795220 (+) True G408893
TU485443 other downstream 1178429 6556363 ~ 6563776 (+) True G408929

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000325_03756360_03757653.mRNA True 1366 mRNA 0.37 3 CI01000325 3756075 ~ 3758167 (+)