RNA id: TU484795


Basic Information

Item Value
RNA id TU484795
length 2481
lncRNA type intronic
GC content 0.39
exon number 2
gene id G408378
representative True

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 5403467 ~ 5406051 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTTATTCCAAAATAAGAAACAAGAacagatatataaaaatatacccTCTGGATATTTCTAGCTGTGGTGCTATGATGATACACGGTGTTTGCAGGATTTAGTTGTGTTCTTGTAAGGCTAGTAGAATGACATGGTCTTTGTGAACGAGTCACTGAGGTGAAAGAATCGGTATCAACTCCGACGTGCACTGAGTGATTCTTTTTGTTCAGTTGCTGCTGACGGGATTTGCAATTTCAACCAATTTTACATGggtttatatgtttttctgaAGTTTATCTTTCAGTCATTATGTCATATTTGTAATTGCGTGTATACCGGACCTGATTAACACCCATTGAATCTTTTGGTCATGGCCGGGATTCGGTCCTGTGAGCGAATCAGTTGAATCAGTGGTTCATTAGATGTgaattaatgattattataagTGCATGCCGTAGTAGTCATGTGCGTGCTGGATGTGGATGTGAACAATAATTCTTCTAAACCAGATATACAAGCATGTAataagataaacaaaaaaatagtgaTAATGATCACGGTGCATACTTGGCCAAAACGGAATGAATCGTTTAACTGAACAGACTCAAATGACTCAAAAGattcaaaaatgttttctctAGGTGTTAAGCTGCTATAGCCATCATCAGTAacatattgttgttgttttgtttttttcttaagtcAGAAATGTTGAGCATGTAAAGCTGAAGTATGTCATGCAGGATTGAGAAACACTTCCGTGTCTTTCACTTTCCACCTGTGTGTCGGGTTGCGTGTATCTGTCAGGACGTGTTTtagcgtttgttagaaaaaggtCAGAGAGAGGTTTGTGGAGAGGTAAAGTATGAGGCAGCATttttgcacatacacacacacacacacacacacacacacacacacacacacacacatatacacacctcagcatgtgtgtgcatgcacacgcacacacagacaggcagaggCCTCCTGCTTCAGGAAGTCCGCTGCACAGGAGACGTTAAACACTCAGTTCCTGTTTGGCATATGATTCcactgagactacacacacacacacacacacacacacacacacagtgttcacaGGGTTACGAAAAATCCGCCACCATTTTCAGTTGAACTGCTCCGTGACCCCTCCCTCCCCCAAAACCCCAAATATTCGGCTGACGTGGTTCAGTCTTGAGTCCGTGCCCAGAAAAACGAAAGCAgtgagatcacacacacacacacacacataaacaccatcatgtCTGGATCACTCCTGACAGGTACGAGCGGATACACTAATCCCTACAGACCTTGAGGCATTTCAATTATTATCCATAAACATAACTGCAAAGCTCTGGGAAAATGTAACTCTCCTGGTCGGATTTTCTGGAGTGATTCCATGATCAGGGTGCCATTTAGAACTTAAAAAGGTAACtcgtaaaaataaaaaataataattttctatcAAATTTCAGCtttgaatctaagaaaacacacatttaaccaTTCGAATGAGtaacaggctcaaaagtaacaaCAGTTTTTTAACACAGAATtagcaaacacacaacatgtggttaactagcattcATGCTAATGCTATGAGAACATTAAGGGCATTCTAATAAtttacttcctttttttattaattaataatatacttTTAGTCTATCATTTGACAGTGTTGTACGTTCAAATTGACGTCATCAAAGAACATcacaatatcattaaaaattatGAAGAAAGAACGAGAGaacttaattttcttcttctcgtgatcttcaggaaatctgGATGACACAACGTCCTGttgaacttgtgtgtgtgacgtgtggaacattccaaatatttcataggggtgaatgtgttcagatAACAGGGCTGATGAAGTGAATGAACTAAAATGTCCATGGAAAAGGACGTTTCAAGCGTGAGATGTTAAAAGGATTcgcacattaatacaaaaataatacagtttatttatatgaaGCATTTTAAGGATTATATTTTCAAGTGCAACAGTGTTGTTTTGTAGGTTTTGTAAGGTTTATGAATGCTTTAAGGGTCTGAAACATGCACGTAAGTTGTGATGAAGAACCCTTTACCTGTGTTTAAAGtgtcttttacctttaaatGGAGAGAAAGTGTTTATCCACGTGCTGTTAGgattataacacagcaattacCATCTGAGCAGTGTGTCCTATCCAAGCCTAAAGTGGTCGTTAGGGTAATTAGATTTTGGGAAAACAGAAGGGCGGGTATGTTTTGTTTCCTTCGAACTGTTACCGAAATAAATAAGAGGCGAGCTCCACGAGTAGATGTGCAAATCGTTTCAGAGTTAAACACTGTAATCTACATGTAGTTATTACTTTGAACGCAGTTCTCgaataaacacacataatacacaacCCACATGCTATCCATATCAGTCACGTCCAGCGTTGTAATTCGTACCCGTGAGGATGAATAGCAGCGCGCACTTCGGTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU484793 lncRNA upstream 1182 5401931 ~ 5402285 (+) True G408376
TU484786 lncRNA upstream 25533 5376056 ~ 5377934 (+) True G408369
TU484780 lncRNA upstream 28399 5356138 ~ 5375068 (+) True G408364
TU484774 lncRNA upstream 59405 5343505 ~ 5344062 (+) False map3k7
XR_004577678.1 lncRNA upstream 159792 5223681 ~ 5243675 (+) True LOC113529394
TU484955 lncRNA downstream 199320 5605371 ~ 5605584 (+) True G408531
TU485168 lncRNA downstream 483462 5889513 ~ 5889799 (+) True G408711
TU485271 lncRNA downstream 642515 6048566 ~ 6066515 (+) True G408805
TU485288 lncRNA downstream 661878 6067929 ~ 6068392 (+) True G408821
TU485290 lncRNA downstream 664535 6070586 ~ 6070797 (+) True G408823
XM_026917981.2 mRNA upstream 59417 5322646 ~ 5344050 (+) True map3k7
XM_026917982.2 mRNA upstream 59417 5322648 ~ 5344050 (+) False map3k7
XM_034302114.1 mRNA upstream 388393 4938498 ~ 5015074 (+) False epha7
XM_026918327.2 mRNA downstream 91116 5497167 ~ 5546607 (+) True mdn1
XM_026917866.2 mRNA downstream 142572 5548623 ~ 5557518 (+) True katna1
XM_034301888.1 mRNA downstream 183806 5589857 ~ 5603470 (+) True LOC113529080
XM_026917736.2 mRNA downstream 278025 5684076 ~ 5694444 (+) True lrp11
XM_026917556.2 mRNA downstream 307405 5713456 ~ 5719651 (+) True nup43
XR_004577669.1 other upstream 743772 4655964 ~ 4659695 (+) True LOC113529331
XR_003403042.2 other upstream 743772 4655964 ~ 4659695 (+) False LOC113529331
TU483755 other upstream 1521845 3876675 ~ 3881622 (+) False LOC117596542
XR_004577677.1 other upstream 1653276 3672852 ~ 3750191 (+) False tab2
TU485026 other downstream 327744 5733795 ~ 5736261 (+) False lyrm2
trnag-gcc_30 other downstream 336741 5742792 ~ 5742862 (+) True trnag-gcc_30
XR_004577658.1 other downstream 865981 6272032 ~ 6276665 (+) True LOC117596600
TU485379 other downstream 1077050 6483101 ~ 6795220 (+) True G408893
TU485443 other downstream 1150312 6556363 ~ 6563776 (+) True G408929

Expression Profile