RNA id: XM_034301888.1


Basic Information

Item Value
RNA id XM_034301888.1
length 4333
RNA type mRNA
GC content 0.49
exon number 23
gene id LOC113529080
representative True

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 5589857 ~ 5603470 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACACAGCAACGCAACACTAATTTTGTACTAATTCTTTTGGAAAGTTCCTCAGAATTCGATACTGATCTCGAGACAGCAAACGCGCACAACGAGTTCAGATATGGATATACAGAGTGATTATACAAATGCTACAATGTCTTCTGGTGGAATTTCACCACAAATCCAGCCTTGCCACATTTTTGGTGTGTGCAAAGGAGTAAGGAACAACTTACTCTTTCCGGATGAGGAAACAGTGATTTTCCCAAGTGGAAACCATTGTGTCCGCTACCACGTCCATCAGCGATGGACCGAGTTCATTCACGACGCAAAGGGAAGCAAGGGCATGCAGGCCCTGGCTTTAAGCCCCGACCGCCGCTACCTGGCCGTATCAGAGAGCGGTAAATGGGGCACCATCACCATCTTTGACCTAGAGGACGAGAAGTGCTGCAAGAGATGGGTTCTGAAAGGCAGCGACTTCGGCGTTGAGGAGTTCGTCTGCATGGCGTTTTCTGCTGACTCAAAATACCTGCTGGGCCAGGCTGGAGGACCCACATGGACCCTCTTCTACTGGCAGTGGGAGGAAAAGGAGCTCATCGCTACTGTGAAGACCACGAAGGATAACGTTATCAGTCAGGTCAGTTTTAACCCTCAGGATGACACGCAGATCTGCGTGAGCGGAAAAGGAGTCTTCAAGATCTTCGAATTGAAGAACGGCTTCCTGAGACAGGCCAACTCATATAAGATGGAGCACGAGGACGTCCTGTGCCATACGTGGATGTCTGGGGACTGCATCATCGCAGGAACCGAGGCAGGGAAACTGCTAATGTTGAAGTCCAGACACTTGCACAAGCTGGGGAGACCATATGAGAGGCAAACGGAGGAGAGGGACTCGTCTTCATCTCCGGCCGTACCGGCATCTGTCACTGCCATCACGCGGTATTCTAAAGGCTTTGTCTGTTCAGCTGGCCTGGGTTTAGTTTGTCTCTATGAGAAAACTATGGAGAAAGACAACTACAGGAAGACCGCGGAAATAAGAATTCCTGCGGACCCATACAGCAATCAGCCACGTCAGGCAATTCCCACAATGTGCATTAGTCCAGCAGAGGAGACACTGGCCATCAGCACAGACCAAGGCCAACTCTACCACATCAGCCTCACCTCGACTGAGATTAGCGAGAGTAAAGAGGCCCAGTTCGAATTCCTGTCTCACTCACTTCACTCGAAGAGCATCACCGGTCTGTCCATCTGCAAGTCGAAACCCCTCATCGCCACCTGCTCGAAGGACTGCACCGTGCACATCTGGAACTACAGGACCAActCTCTGGAGCAGTTTAAGCTGTTTGATGAGGAGCCACTCTGCGTGTCGATGCACCCAAATGGCCTCTCCATCCTGGTGGGCTTCTCCACTGAAGTCTGCCTCATGAACCTGTTAACTGACAACATCCGCACTGTCCAGACCTTCGCCACAAGCAACTGCACTGAGtgtgtgttcaACCACGATGGCAACATGTTCGCCGCCGTCAACAAAAATGTGATACACATTTACAATATCAGAACAGGCGAGAAACTGGACCTGAATGGCCACCGTAAGAAGGTGCAGACGGTGAAGTGGAGCAATGATGACTGTCGTCTGGTGTCATGTGGGATAGACGGCGCCGTTTACGTGTGGAACACTCTGACCGGCGACTACGAGAATAGGAATGAGACTAAATGTAGCTACACGGATGTGACGTTCTCGCCTAACACCGGCAGCGTCCTCGCTGTAGACCACTTCAATCTTAAGGAGATCCATAATGAAAGGaTCCGATGGGAAATGGCCTCAGATGGTGTGACCTACACGGCTATCTCCATGACTCGTTCAGGCCAAACAGTCTTCATTGGAACTGCTGCTGGTACTGTTAGGGTCATCGAATACCCTTTTGGAAAGGAGACAACGTGGACAGAACATCTGGCTCATTCTGGTCCCATCACCAAAATGGTTGTCACACCTGGTGATCAGTATCTGCTGACTGCCTCAGAGGACGGCACCCTCCTCATCTGGACGATCACTGGCCAGGAGGGAAGAACGATGGAGATGGTAAAAGAAATAGATTACGCTGAGGAGGTCCTCTGTACAAAGGCGTATCTGGATGAAAAGGACCAGACTATACATGAGCTCAAGTCCCACATCAAGGGTCTGAAGGTGGAGCATGAATACAAGCTGAATGTGAAGGACATGGACTGCAACAAGAAGATGAACAACATTACTCAGAATTACCTCCAGCAGATAGAGGCTCTGAAAGACCAAATCCAGGTGCTGACTACTGAGAAGGAGAATCAGAGGGTCTGTCACCAGAAGGCACTGACTGAGATGAAGGAAAAACACTCCAAAGAGCTGAAGGATAAGGACCTGAGCTACAGCGGGAGGATGATTTTGGAATACGATAAGTACCGTGAGTTGGAGCAGAAAATGCAGAAGATGCAACAGAAGCATGAGAAGAACCTGCACGAAGCTGAGGACAGCCACCTCCGTGCTATGGAGGACAGGAAACAGGCTTATGAAGCCAGGCTGCAGGAGCTACAGGCCAAGTTGGAGTGGGAAGTGAAGAACTCTGAGGAGAAGCAGATGAAGATTAAGGACAACGCTGAATCTGAGCTCATGGAAATCTGCCACGATTACGATCACGATCTCCAGGTGGAGAAGGAGACCAAGCTGAGAGTCCAGTGTGATATGAAACTCATGGAGAGGAAGaTATCACGGTACTGGACAATGAAACGCGAGATAAATGATCAGGGGTTTAAGATCTGTaagctggaggaggaggtgaagaaCCTGAGGGACCAACTCAAGAATGCGACAAACAACATCGAGGATCTGACAAAGGAGATGGAGGAGCAAAGCAAGATCATCAGTGACCGGGACCGCTACATTGAAGAGCTCCACGAAACAATTGAAAAGCAGGAGATGAGCTTAGAACAGAAGCAGGAAGAATTGGTCAAGATGATCTTGGAGAGTAAAAAGCATGAAGAAGAAAGTAAGCTGAAGAGCGACAAAGAAAGGAGTGAAGTCGAGCGACTTGAGAAAGAAGTACAGGAGAATAAAGAGACGTTCAAAGAGATTGCTGCTGATGTGGTGCGAGTCAAGAAGAAGAATGAGGAGATCATTGGTGGCCTGAAGCAGAAGCTGAAATCAAAGGACAAAGCCTTGCTCATCGAGAGGCATAGGGTCAGAACCGTAGATGTCCTTGTGCAAAGGATGAAGGGCGACATCCAAAACTGCGCACGCTTCATCCAGGAGCCGAAGAAGCTGAAGGAGAGCTTCAGCGAGCTCCATGCACGCTATGTCCATAAACCAGATGTGACAATCGAAGTGGATGCTGAGGTCATGCAAGAGCACACCATGCAGATGGAGCACTTCCAGAAGATCTTGGACTCTCAGAAGACAAGGCAGGCTAAGGAGATCAAGCATGAGAAAGCGAGATACTCCAAGATCGTGAAGgAGAGTGGCTTTCTGATTGAACAGCTTAAGGAGCAGAAACTAAGCCACCAGCAGCTGCTGATCAGCCTCAAAAAGAACAATGTCCAATGTGTCAAGActgcAGCATCCTCTGCGATCTTACTGGATGAGTCCAGGCCAGTGGTCCAGCTTCAGCGCCCAGTAAACCAGAGGCTAAAGAGGAATCTCCTGGATAAGAGACAAAGCCAAATCTTTGCACTGCAGAGTTCATCAGGCCATGACAAATTACCACCCATTATCACCACCAAGAAGACCAGATGATTGCCGGGGAGGTGTCGAACACTTGGATGTAGTCTAGTGTGGGGGCGCGCGCAAGCCGAAGTCTGAAAGCTTTCCAGGAAACTATTCACCAAGTGCCCATCCTTGGGTCCATCCTTGTCCTACACAGGGTGGACACCGAACTGGGGTCTAAGCCACCAGTTGGCTGCCCTGAATTGGCATTGCCATAGTTTCCAAATTGGTGAGGCGGTGAACAGAGGAACAAGGGTAATGGATGTACACATGGTGCAGCACACGATGAATTAGAAAAGGAAAGACTTTGTGGGACGTCTCGGCATTAGAGGATATCCAGGTGTTTGACACTACCCCTGCCCGTCAGaaggaatgaaataaaagcaagcCTGGTATTAAATCTACTAACTGCCATCATTTAAGTCCCGGTGCATGTAGAAACAACTGAAATCGACAGAGCACACACAATACTGAACTGATGCCAAGTAAATTATTTGATAATGATACTATGATATCATTGATACTATGAGCTATTTTTGTGTACCATTTCCACCCTTTTTTGTTCTAGACCAGAACGAATTGTCATGTtgcagctctgtgctttggttCAATTTACTTTTGTTATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU484795 lncRNA upstream 183806 5403467 ~ 5406051 (+) True G408378
TU484793 lncRNA upstream 187572 5401931 ~ 5402285 (+) True G408376
TU484786 lncRNA upstream 211923 5376056 ~ 5377934 (+) True G408369
TU484780 lncRNA upstream 214789 5356138 ~ 5375068 (+) True G408364
TU484774 lncRNA upstream 245795 5343505 ~ 5344062 (+) False map3k7
TU484955 lncRNA downstream 1901 5605371 ~ 5605584 (+) True G408531
TU485168 lncRNA downstream 286043 5889513 ~ 5889799 (+) True G408711
TU485271 lncRNA downstream 445096 6048566 ~ 6066515 (+) True G408805
TU485288 lncRNA downstream 464459 6067929 ~ 6068392 (+) True G408821
TU485290 lncRNA downstream 467116 6070586 ~ 6070797 (+) True G408823
XM_026917866.2 mRNA upstream 32339 5548623 ~ 5557518 (+) True katna1
XM_026918327.2 mRNA upstream 43250 5497167 ~ 5546607 (+) True mdn1
XM_034302184.1 mRNA upstream 115459 5365842 ~ 5474398 (+) True bach2b
XM_026918085.2 mRNA upstream 115459 5385348 ~ 5474398 (+) False bach2b
XM_026917981.2 mRNA upstream 245807 5322646 ~ 5344050 (+) True map3k7
XM_026917736.2 mRNA downstream 80606 5684076 ~ 5694444 (+) True lrp11
XM_026917556.2 mRNA downstream 109986 5713456 ~ 5719651 (+) True nup43
XM_026918304.2 mRNA downstream 116444 5719914 ~ 5730099 (+) True lats1
XM_026918311.2 mRNA downstream 130190 5733660 ~ 5736263 (+) True lyrm2
XM_026918143.2 mRNA downstream 174953 5778423 ~ 5808281 (+) True ube2j1
XR_004577669.1 other upstream 930162 4655964 ~ 4659695 (+) True LOC113529331
XR_003403042.2 other upstream 930162 4655964 ~ 4659695 (+) False LOC113529331
TU483755 other upstream 1708235 3876675 ~ 3881622 (+) False LOC117596542
XR_004577677.1 other upstream 1839666 3672852 ~ 3750191 (+) False tab2
TU485026 other downstream 130325 5733795 ~ 5736261 (+) False lyrm2
trnag-gcc_30 other downstream 139322 5742792 ~ 5742862 (+) True trnag-gcc_30
XR_004577658.1 other downstream 668562 6272032 ~ 6276665 (+) True LOC117596600
TU485379 other downstream 879631 6483101 ~ 6795220 (+) True G408893
TU485443 other downstream 952893 6556363 ~ 6563776 (+) True G408929

Expression Profile