RNA id: TU485271


Basic Information

Item Value
RNA id TU485271
length 449
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G408805
representative True

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 6048566 ~ 6066515 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGtacatatgttttgtttttattttttttttcattagcattttttattttacagagatTGCCAATCTTTACTGCACATTGATTGATTGTACCTTTAGAGTGGATATTTAAGTTAGGAAAGGATTTTCAGTAAGGCATTGTCAGGATTAATTGGTTAACCTGGTTTTAGCAGATGAGTTGATTTCAGTAGTTAGTGCATTTTTAGAATATTAGCTCACATGGTTACATAAAAGCCTTATTCAACAAACTATCACTTGCATAGCTTTTATTTTCGCATTAACTGTTATGCAGGATTGGTTTACCAATCAGTAACGATggcctttttatatttttgatacACTGCTGATTGATAGATGAGCTAAGCAGATGCACATGAACCTTAAATCAGTGCCAGTTTAGTTAAACAAGTATacacacacacacacacacacacacacacgcacacacacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485168 lncRNA upstream 158767 5889513 ~ 5889799 (+) True G408711
TU484955 lncRNA upstream 442982 5605371 ~ 5605584 (+) True G408531
TU484795 lncRNA upstream 642515 5403467 ~ 5406051 (+) True G408378
TU484793 lncRNA upstream 646281 5401931 ~ 5402285 (+) True G408376
TU484786 lncRNA upstream 670632 5376056 ~ 5377934 (+) True G408369
TU485288 lncRNA downstream 1414 6067929 ~ 6068392 (+) True G408821
TU485290 lncRNA downstream 4071 6070586 ~ 6070797 (+) True G408823
TU485291 lncRNA downstream 5087 6071602 ~ 6072496 (+) False G408824
TU485293 lncRNA downstream 5087 6071602 ~ 6072669 (+) True G408824
XR_004577649.1 lncRNA downstream 17169 6083684 ~ 6093863 (+) True LOC117596591
XM_026918432.2 mRNA upstream 44 6034549 ~ 6048522 (+) True ivns1abpa
XM_026917970.2 mRNA upstream 138671 5903579 ~ 5909895 (+) True arpc5b
XM_026918214.2 mRNA upstream 184950 5848012 ~ 5863616 (+) True gabrr1
XM_026918197.2 mRNA upstream 213623 5810314 ~ 5834943 (+) True gabrr2b
XM_034301907.1 mRNA upstream 213623 5810314 ~ 5834943 (+) False gabrr2b
XM_034302062.1 mRNA downstream 181546 6248061 ~ 6309253 (+) True LOC117596576
XM_034302068.1 mRNA downstream 296649 6363164 ~ 6368783 (+) True LOC117596580
XM_034301889.1 mRNA downstream 313558 6380073 ~ 6384224 (+) True LOC117596543
XM_034302066.1 mRNA downstream 328341 6394856 ~ 6437763 (+) True LOC117596579
XM_034302067.1 mRNA downstream 366371 6432886 ~ 6437763 (+) False LOC117596579
trnag-gcc_30 other upstream 305704 5742792 ~ 5742862 (+) True trnag-gcc_30
TU485026 other upstream 312305 5733795 ~ 5736261 (+) False lyrm2
XR_004577669.1 other upstream 1388871 4655964 ~ 4659695 (+) True LOC113529331
XR_003403042.2 other upstream 1388871 4655964 ~ 4659695 (+) False LOC113529331
TU483755 other upstream 2166944 3876675 ~ 3881622 (+) False LOC117596542
XR_004577658.1 other downstream 205517 6272032 ~ 6276665 (+) True LOC117596600
TU485379 other downstream 416586 6483101 ~ 6795220 (+) True G408893
TU485443 other downstream 489848 6556363 ~ 6563776 (+) True G408929
TU485391 other downstream 782991 6849506 ~ 6851954 (+) False LOC117596594
TU486240 other downstream 1811280 7877795 ~ 7878545 (+) True G409600

Expression Profile