RNA id: TU485288


Basic Information

Item Value
RNA id TU485288
length 464
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G408821
representative True

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 6067929 ~ 6068392 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACAGCTCTCCAAACGCAGCCTTCATCTCTTCCTCCAGGATGGCGGACAGAGCGCTCTGCAGGCTGCTCTCCAGCAAGGACACGCACTCGCTCAGTTCTCGCTCTGTCTCCTTCTTCCTGCTCGTCTCCACCTCTTCATGCAGCCTGTGTGCCTTCTCTGCTTCAACAAATGACAGATGAAATAATTAAGGAGTCGTCAGGAGTGTGTAAGATGTGAGCATGTGCTCCAGTGGAAAGCATTGTGTCTGAGACTGTGTACACACACGAGTGTTAAAAAGGATACAGGTATTCTTCAGAATGAAATACGGAGCATGTCACCTTCCTGATGTTGCTTAACGGGTGCTTCGTGTGGATAAGCAGCAGTCTGGCCATAGCGTTGATGAAAGTGCTCAGGGGTTACTTCTGCCTGCTCCTGTAGATCGGCTTTACTCAGGGCCTTGACTCCACTCAGCAGAGCTTTACTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485271 lncRNA upstream 1414 6048566 ~ 6066515 (+) True G408805
TU485168 lncRNA upstream 178130 5889513 ~ 5889799 (+) True G408711
TU484955 lncRNA upstream 462345 5605371 ~ 5605584 (+) True G408531
TU484795 lncRNA upstream 661878 5403467 ~ 5406051 (+) True G408378
TU484793 lncRNA upstream 665644 5401931 ~ 5402285 (+) True G408376
TU485290 lncRNA downstream 2194 6070586 ~ 6070797 (+) True G408823
TU485291 lncRNA downstream 3210 6071602 ~ 6072496 (+) False G408824
TU485293 lncRNA downstream 3210 6071602 ~ 6072669 (+) True G408824
XR_004577649.1 lncRNA downstream 15292 6083684 ~ 6093863 (+) True LOC117596591
TU485298 lncRNA downstream 15294 6083686 ~ 6093859 (+) False LOC117596591
XM_026918432.2 mRNA upstream 19407 6034549 ~ 6048522 (+) True ivns1abpa
XM_026917970.2 mRNA upstream 158034 5903579 ~ 5909895 (+) True arpc5b
XM_026918214.2 mRNA upstream 204313 5848012 ~ 5863616 (+) True gabrr1
XM_026918197.2 mRNA upstream 232986 5810314 ~ 5834943 (+) True gabrr2b
XM_034302062.1 mRNA downstream 179669 6248061 ~ 6309253 (+) True LOC117596576
XM_034302068.1 mRNA downstream 294772 6363164 ~ 6368783 (+) True LOC117596580
XM_034301889.1 mRNA downstream 311681 6380073 ~ 6384224 (+) True LOC117596543
XM_034302066.1 mRNA downstream 326464 6394856 ~ 6437763 (+) True LOC117596579
XM_034302067.1 mRNA downstream 364494 6432886 ~ 6437763 (+) False LOC117596579
trnag-gcc_30 other upstream 325067 5742792 ~ 5742862 (+) True trnag-gcc_30
TU485026 other upstream 331668 5733795 ~ 5736261 (+) False lyrm2
XR_004577669.1 other upstream 1408234 4655964 ~ 4659695 (+) True LOC113529331
XR_003403042.2 other upstream 1408234 4655964 ~ 4659695 (+) False LOC113529331
TU483755 other upstream 2186307 3876675 ~ 3881622 (+) False LOC117596542
XR_004577658.1 other downstream 203640 6272032 ~ 6276665 (+) True LOC117596600
TU485379 other downstream 414709 6483101 ~ 6795220 (+) True G408893
TU485443 other downstream 487971 6556363 ~ 6563776 (+) True G408929
TU485391 other downstream 781114 6849506 ~ 6851954 (+) False LOC117596594
TU486240 other downstream 1809403 7877795 ~ 7878545 (+) True G409600

Expression Profile