RNA id: XM_026918143.2


Basic Information

Item Value
RNA id XM_026918143.2
length 4042
RNA type mRNA
GC content 0.42
exon number 8
gene id ube2j1
representative True

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 5778423 ~ 5808281 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCAAATTAAATGGACAATGTCTCCAAagctgattttttaaatgtatttattattttttttcctagataTACTATCTTACTGATGTCCATAACACTAAGGAACATGtccaaaaagctctgaaacgcTAATGTTCATTTCTAGGGTGCTTTAAAAgttgtttaaataaagtttttgcCATTCAAAATGGCTAGGTTTGTTCCTGCTTTCGCTTTTTCAGCGCTTGTTGTAGGAGTAGGAAGCGTTTGAGTTTGTCAGCGCGGATGAACCTCTGCCACGTCAGATTGTTCACACCGCCGGGGCGAAGCCGCAGCTCGGCGTTCAGACTCACTGACAGCGCGGCTGTGGAGCTAACAGGCTAATCAGCGCAGAAACACAAGCCGTGGGGCGCAGGGAAGcaaagctagctggctaacaggAAGAAGCTAGCTGCCTGGTCCGAGTGTTCTTGGAGAACCACGTCgggtttctttctttattttttaaattcatttttctttaattttgtgctttttttgtgcGTGTCAGGATGGAGGGGAAATACAACCTGAAAAGCCCGGCGGTGAAGAGGCTGATGAAGGAAGCGGCTGAACTCCGAGATCCCACTGAGCACTATCACGCCCAGCCTCTGGAGGATAACCTCTTTGAGTGGCACTTCTCAGTGCGCGGGCCTCCAGATTCGGACTTCGACGGAGGGATCTACCACGGCCGCATCGTCCTTCCTCCTGAGTATCCAATGAAGCCACCAAGCATCATCCTCCTCACCCCCAATGGGAGGTTTGAAGTCGGGAAGAAGATCTGCCTGAGCATATCTGGGCATCACCccgagacctggcaaccctcctGGAGCAtccgGACAGCTTTAATAGCGATTATAGGCTTCATGCCGACTAAAGGAGAGGGGGCCATTGGATCACTGGATTACACTCCAGAAGAAAGGAAAGCCCTGGCCAAGAAGTCTCAGGACTTCTGTTGTGAGATGTGTGGCTGCTCCATGCGCACAGCTCTGCTGGCACTGACGCCCAACAGCGAGCGCCAACCCTTGGACCCTCAGGCTCAGCAACTAGCACAGCAGATCAGCTTTAAGGCTGAGTCCAGCACATCGTCCAGCGCCAGTGGGAGTAAAGAGACAGCGAGTGTTAGCCAAACCAGCCAGCAGGAGACGAGTTCCACCCCAGAGGACAGTGAAGGGACAGCTCAGGCCGAACAGGCTGATTCGGTGTCTGAATCCGCTTCCACTCCTGCAGCTCCCACCTCTCGGTCCCTGAGCCCTCGACAGCGCCGCGCTCAGAACCGGAACCAGAACCAGCCACAACGCCGGCCCACTTACCCAGCATTCCCTGCAGCAGCACAGCAAGACGGCAGCCACGCGGGCTCGGCCGTGCTCATCGTGCTACTCACGCTGGCTCTCGCCGCCCTCGTCTTCCGCAGGATCTACCTGGCCCAGGACTACAAGTTTGACTACGAGCTCTGACCacagagtttaaaaataaactccCACTAAAACTAAACTGCCACCAACCTTCACCACCTTCCAGCTGCCACCATCTCCTCAGTGATGCCTGATGGTGTTTAATCGTGCATACCACAGGAGGAGGGCAGCGCATACTGTACTTACTTAGAAAAGAATCACATCTCTACTatatttagaagaaaaaaaaaatgactgacttGTGTTGGAAATACACACTTTCCTGATTTTAAAGGACTGACACCTGTCCAGGAAATGTGGGATACACTTTATCAATGGGATATCACTGTTTTTCCTCGTATACTGATATGTTAGTTGACTAGGTTATATCTATTGCAAGCCATTTTATTTGagttcaaattttatttatgaagcCGGATATGAAACAGTTTATTCTTAATCATTCTTAGGAGCAGAGCATTTaaacaagaaatgtggtattaaaccctaaaccctaaaccctccTTAGTTCATGCCCCATCGTTTGTGTAAATtatgtataaggagactcactaatctgAACATtgattgattttaaaatcaCGTAATCATCAATGAGTTACTGTAGCAAATTACtgcaatgtttttaaatctggtgcgaatttttagtttggtttggcctacaaaaacatttacacaaactaTGATGGATACATGAGGCCCAATACTTGCCATTCACTGAATCTGGCtaggcttctgtttacatttttatggccctacttgtctttaaaaatgctttaaaaaaacaaatgggaTTGTCACTGTTTTCGCTGCAGTTGTATGTAGTAGACTACtctaaaaattatatattgttcttattaatattaatggttGACACATAAGCACTCAGTTTTTTTGGGACTACATGAAAGTTGGGCAACTATTTACTTAAAAGCAGATATCTGATTCTAATATCTCAAAGGAAATATCAAAACTAAAAGTGCttagtaaatataatgtaaGCATTAGGCTTGTTCTATATTGCTTATTCTATAATtcaaggtgaatgaatgaatcactcaaataataaaaaaaaaaacgagcatTTTTACCAGTTCAGGTTTAAGAGTATGGGAGTGCGTAATGTTATTAACTGTGAAGTcgggaactgcttgctggcagtggcaatcATGAAAACTCGGCTGcctatttttcagtgtttatgtAGTAATGCACAGTAAAAAGCCACTTTGATGCAgtcctatttaatcttttttggggtaaacaaaaaaaaaaagtttctttttttctcttttggcaaaaaaacaaaggcCATAtatgcctgatttttttttttttttttgtggcatcCCTTATAACGACAGTTACGTGATGTTGACTGTATACTTGTCTGATGTTAGCTAGGTCAAACATACattaatagattttatttcaccttcATGTACTCAAAAATATTCTCCTTCTTCATCTAGCTCGACAGAAAGCAAGGCTGCCGCACAAGTCCAGTCGAGAGAATGTGAGACTGggtgagggggcggggcttccaggtgaTGTCAGTTAATactggagagttcaaaacacattGGGAAATCCTTCCAGATTCATATATCTGTTGACTCATCTCCTGTTTTCCTGCTTTTATGGTACTTTTTGATTGACATCTCCACTGTTTTTGTATCTTCAGTTGCAGAGCTGCTACACAAAATGTTTGCGGGTCTgttaacataatataatataatataatataatataactggATATCATGGCAGTGTAATATCATGTAGGGACGATTAAACTGTTATAGCGCACAAGTCTAATAAGTGTGACTAGGATGATATGACTAGGATTGTGAAATACTAGCCTTGATTTCTAGACCTGGACTGAAGGGGGTGGGGGTGTTTTCTAATGCAAGCCAGTCACTTTCTACTAACGAATATAATAATAGATATGAGACAAGCTGGGAAATGTGTTCTCCAGCCAAAGCTTTCTTCATTGGTTGCCAAGCTGAGAGAGCTGTACCCTCTGTTACAGGGCACACACACGATCAGCAGACCTTCAAGAAGGACAAAATTACAAACCTTGGAAACAAAGGAAGATGATGACTGATCAGCAATATTGCATTCCTATagacagggatttttttttttttataaatccgGTTTAGAAAAGCTAATATATGTTATTATGACCTGTAAACATGATAAAAAGACTTTTAAGCCTCACAAGGCTATTGATGCATGTGCTTTTGGTCGGGTAAAAATATTGTCGCATTGAATTACACCCCATCTAACGTCCACCAAAGTTACTATGAAGTTCATTAAAGTGTATTAGGTTTAGACAAGCTCATGCGGAACTCTACGCTCATAAATATTGaacagcacatacacatacgGTTGCTGAAGTACCCCTTAGTGAGGGTTTAGCCAGAATAAGTTCAGACAGACTGCGTGAATCTTTTCAGCCTGTCAGTTTACGTGTAGTGCTTTTAATTGTGACCAAGTTTTACGCTAGTGACCCTGCAATTAAAATGGCTCGGTTTGAATCTGAGCTGTGTGCTGTCAAAGCTGTTCTATGATTTTTAACAAGAGGCTGATTAAAATTGAGAAAATTAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG:

id description
K10578 UBE2J1, NCUBE1, UBC6; ubiquitin-conjugating enzyme E2 J1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU484955 lncRNA upstream 172839 5605371 ~ 5605584 (+) True G408531
TU484795 lncRNA upstream 372372 5403467 ~ 5406051 (+) True G408378
TU484793 lncRNA upstream 376138 5401931 ~ 5402285 (+) True G408376
TU484786 lncRNA upstream 400489 5376056 ~ 5377934 (+) True G408369
TU484780 lncRNA upstream 403355 5356138 ~ 5375068 (+) True G408364
TU485168 lncRNA downstream 81232 5889513 ~ 5889799 (+) True G408711
TU485271 lncRNA downstream 240285 6048566 ~ 6066515 (+) True G408805
TU485288 lncRNA downstream 259648 6067929 ~ 6068392 (+) True G408821
TU485290 lncRNA downstream 262305 6070586 ~ 6070797 (+) True G408823
TU485291 lncRNA downstream 263321 6071602 ~ 6072496 (+) False G408824
XM_026918311.2 mRNA upstream 42160 5733660 ~ 5736263 (+) True lyrm2
XM_026918304.2 mRNA upstream 48324 5719914 ~ 5730099 (+) True lats1
XM_026917556.2 mRNA upstream 58772 5713456 ~ 5719651 (+) True nup43
XM_026917736.2 mRNA upstream 83979 5684076 ~ 5694444 (+) True lrp11
XM_034301888.1 mRNA upstream 174953 5589857 ~ 5603470 (+) True LOC113529080
XM_026918197.2 mRNA downstream 2033 5810314 ~ 5834943 (+) True gabrr2b
XM_034301907.1 mRNA downstream 2033 5810314 ~ 5834943 (+) False gabrr2b
XM_026918214.2 mRNA downstream 39731 5848012 ~ 5863616 (+) True gabrr1
XM_026917970.2 mRNA downstream 95298 5903579 ~ 5909895 (+) True arpc5b
XM_026918432.2 mRNA downstream 226268 6034549 ~ 6048522 (+) True ivns1abpa
trnag-gcc_30 other upstream 35561 5742792 ~ 5742862 (+) True trnag-gcc_30
TU485026 other upstream 42162 5733795 ~ 5736261 (+) False lyrm2
XR_004577669.1 other upstream 1118728 4655964 ~ 4659695 (+) True LOC113529331
XR_003403042.2 other upstream 1118728 4655964 ~ 4659695 (+) False LOC113529331
TU483755 other upstream 1896801 3876675 ~ 3881622 (+) False LOC117596542
XR_004577658.1 other downstream 463751 6272032 ~ 6276665 (+) True LOC117596600
TU485379 other downstream 674820 6483101 ~ 6795220 (+) True G408893
TU485443 other downstream 748082 6556363 ~ 6563776 (+) True G408929
TU485391 other downstream 1041225 6849506 ~ 6851954 (+) False LOC117596594
TU486240 other downstream 2069514 7877795 ~ 7878545 (+) True G409600

Expression Profile