RNA id: TCONS_00008283


Basic Information

Item Value
RNA id TCONS_00008283
length 264
RNA type mRNA
GC content 0.48
exon number 3
gene id XLOC_004369
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 43102421 ~ 43104475 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTTTCTCCGTGATTTAAGCGTCTGCTGGACGTCTCTTCTGGCTTTGACCCTcgtcatattgtctgcaatgtcTTCAGAAGCCGGTGACAAATATGTGTCTGTAGATTTCGAGGTGTTCGGGAATGTTCAGGGTGTTTGCTTCAGAATGTATACTGAAGCAGAAGGAAAGAAACTGGGAGTGACGGGCTGGGTGAAAAACACTAGACAGGGCACTGTGGTTGGGCAAGTGCAGGGACCTCCGGAAAAAGTCAAGGAAATGTGA

Function

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function
GO:0003998 acylphosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130530-886 Predicted to enable acylphosphatase activity. Orthologous to several human genes including ACYP2 (acylphosphatase 2).

Ensembl:

ensembl_id ENSDART00000125368

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008870 lncRNA downstream 39435 43061882 ~ 43062986 (-) True XLOC_004368
TCONS_00008869 lncRNA downstream 284717 42809514 ~ 42817704 (-) True XLOC_004365
TCONS_00008497 lncRNA downstream 348421 42752901 ~ 42754000 (-) False XLOC_004364
TCONS_00008496 lncRNA downstream 357241 42742534 ~ 42745180 (-) True XLOC_004363
TCONS_00008495 lncRNA downstream 366573 42735264 ~ 42735848 (-) True XLOC_004362
TCONS_00008871 lncRNA upstream 97060 43201535 ~ 43204207 (-) True XLOC_004371
TCONS_00008287 lncRNA upstream 123937 43228412 ~ 43230364 (-) True XLOC_004372
TCONS_00008872 lncRNA upstream 350994 43455469 ~ 43457258 (-) True XLOC_004373
TCONS_00008873 lncRNA upstream 356920 43461395 ~ 43466520 (-) True XLOC_004374
TCONS_00008874 lncRNA upstream 609235 43713710 ~ 43716304 (-) True XLOC_004376
TCONS_00008282 mRNA downstream 100159 42933823 ~ 43002262 (-) False XLOC_004367
TCONS_00008281 mRNA downstream 100159 42933823 ~ 43002262 (-) True XLOC_004367
TCONS_00008280 mRNA downstream 121886 42929547 ~ 42980535 (-) False XLOC_004367
TCONS_00008279 mRNA downstream 121886 42929547 ~ 42980535 (-) False XLOC_004367
TCONS_00008278 mRNA downstream 183450 42910904 ~ 42918971 (-) True XLOC_004366
TCONS_00008284 mRNA upstream 30723 43135198 ~ 43200994 (-) False XLOC_004370
TCONS_00008285 mRNA upstream 30724 43135199 ~ 43137712 (-) False XLOC_004370
TCONS_00008286 mRNA upstream 41877 43146352 ~ 43226255 (-) True XLOC_004370
TCONS_00008288 mRNA upstream 365701 43470176 ~ 43473824 (-) True XLOC_004375
TCONS_00008289 mRNA upstream 843616 43948091 ~ 43948885 (-) True XLOC_004377
TCONS_00008250 other downstream 1727295 41375011 ~ 41375126 (-) True XLOC_004339
TCONS_00008244 other downstream 2018058 41078191 ~ 41084363 (-) True XLOC_004334
TCONS_00008236 other downstream 2406285 40678213 ~ 40696136 (-) True XLOC_004327
TCONS_00008222 other downstream 2919625 40182681 ~ 40182796 (-) True XLOC_004319
TCONS_00008210 other downstream 4012430 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008295 other upstream 1018852 44123327 ~ 44123458 (-) True XLOC_004381
TCONS_00008303 other upstream 1232682 44337157 ~ 44339220 (-) True XLOC_004385
TCONS_00008317 other upstream 1502376 44606851 ~ 44613734 (-) False XLOC_004396
TCONS_00008372 other upstream 2327058 45431533 ~ 45435014 (-) False XLOC_004416

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU493892 True 463 TUCP 0.40 1 CI01000306 1218095 ~ 1218557 (+)