RNA id: TCONS_00008282


Basic Information

Item Value
RNA id TCONS_00008282
length 5337
RNA type mRNA
GC content 0.52
exon number 40
gene id XLOC_004367
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 42929547 ~ 43002262 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atgttggGATTAAGAGTATTCGATTGCATAGTTTTCATTTCAGTGCATCCATTAAAAAAGTATTTGATTGCACATCTCTGTGATAtgaatattgcatatactattatcacaATAATGATCATTTTTATATATACTGTGCAGCCCCAATATAAGAAACATAATTCATTTccaaatgtaatatgcaaaatggcaatTCTGGCTCTTCATCCGGATAAGATCCAGGTGGCCACCGGTCAGGTTGGGAAGGATCCGTATATCTGTGTTTGGGACTCCTACGCTCTGACGACAGTCTCCATCCTGAGGGACGTTCACACTCACGGTGTGGCCTGTCTGGCTTTCGATGCCGACGGACAGCGTTTGGCTTCAGTGGGACTCGATGCCAAAAACACTGTGTGCGTTTGGGACTGGAAGAAAGGACGTGTCTTGGCCACCGCCACGGGACACTCTGATAGGATCTTTGATATTTCGTGGGACCCGTTTCTGCCACACCGGCTGGTGAGCTGCGGAGTCAAGCACATTAAATTCTGGGCATTATGTGGAAATGCACTGACACCAAAGCGAGGGATTTTCGGGAAGACGGGAGACCTGCAGACCATCTTGTGCTTGGCAACAGCTAAAGAAGAAGTGACGTATTCAGGCGCTCTAAACGGAGATATCTATGTGTGGAAAGGACTCAACCTGACGCGAACCATACAGGCAGCGCACGGCGCTGGGATCTTCAGCATGCACTCGTGTGAGGAAGGTTTCGCCACCGGTGGTCGTGACGGATGCGTGAGGCTGTGGGATGTGGATTTCAAGCCCATCACCAAGATTGACCTCAGGGAGGCTGAACAGGGTTATAAAGGTCTGTCCATCCGCAGTGTGTGCTGGCGGGCCGACAGAATCCTGGCCGGGACTCAGGACAGCGAGATCTTCGAGGTGATGGTCAGAGATCGAGACAAACCTCTGCTCATCATGCAGGGTCACTCTGAGGGGGAACTCTGGGCCCTCGACCTGCACCCAAAACAACCGCTTGCTGTGACCGGCAGTGATGACCGATCTGTACgGCTGTGGAGTTTGTCTGAACACACACTGATCGCTCGCTGCAACATGGAGGAGGCGGTGCGCAGTGTTTCCTTCATCAATGACGGCTCTCAGCTGGCTCTCGGCATGAAGGACGGATCCTTCACAGTCCTGCGCGTCAGGTACTTCAGCCTTCgggtgtccaaactttttgggccgaggCTGTTCTATTTTATTATGGATGTTTGTACTGAACTGAATCAGGTCAAACCCGGTAATGTGCTGTTGTGTGTTGTGTCGTATTGTTCAGAGGCGTATGCAGACTCTAACAGTGGAGAATCAGACTCGGATCTGTCAGACGTCTCGGAGCTGGACTCGGACATCGAGCAGGAGGCTCAGATCAGCTACGAGCGGCAGGTTTATAAAGAAGATCTTCCTCAGCTCAAGAAGAAACTGGCGGGCTCTCTGAAGAGGCAGAAAGCTCCGGATGAAGGGCTGCGCCTGCAGTTTGTCCACGGgtacAGAGGCTGTGACTGCAGGAATAATCTATTTTACACTCAGGCCGGTGAGGTGGTGTATCATGTAGCGGCTGTAGCTGTGGTTTATAACAGGCAGCAACACACACAACGCTTTTACCTCGGACACGACGACGACATCTTGAGCCTCACCGTACATCCACTCAAAGACTACGTGGCCAGCGGACAGGTGGGTCGAGATCCAGCCATCCATGTGTGGGACATCCAAACGCTCAAGTGTTTGTCTCTGCTGAAGGGTCAACATCAACGCGGTGTCTGTGCGCTCGAGTTCACAGCGGATGGAAAGAGTCTAGTGTCTGTGGGTATCGATGAAGAACACTGCATTGTCATCTGGGACtggaaaaaaggagaaaaactGGCCAAATCCAGAGGACATAAGGATAAGATCTTTGTGGTGAAAGGAAACCCGTTCCGCATGGACAAACTAGTGACGGTGGGAATGAAACACATCAAGTTCTGGCTGCACACAGGAGGAGGTTTAACGTTTCGGAGGGGTATTTTTGGGAATCTGGGTAAGCAGGAGACTATGATGTCCGCCTGTTACGGCCGATCTGAAGATCTGGTGTTTTCTGGAGCGACTACAGGTGATGTTTACATCTGGAAGGACACGACACTCATGAAGAGTATCAAAGCTCACGACGGCCCCGTCTTCGCCATGTGTTCTCTGGATAAGGGTTTTGTGACGGGTGGTAAAGATGGAGTGGTGGAGCTGTGGGACGACATGTTTGAGAGATGTCTGAAAACCTACGCCATCAAGAGAGCAGCTCTCTCGCCTTCATCTAAAGGACTGTTGTTGGAGGACAATCCGTCCATTAGAGCGATCACACTGGGACATGGACACATTCTGGTGGGAACCAAGAACGGAGAGATCTTGGAGATCGACAAAAGCGGCCCCATGACTTTACTTGTACAGggtCATATGGAGGGGGAAGTTTGGGGTCTGGCCGCTCATCCACTGCTGCCTATCTGTGCCACAGTGAGTGATGATAAAACACTGCGCATCTGGGAGCTTTCAGCCAACCATCGAATGGTGGCCGTCCGGAAACTAAAAAAAGgtgGTCGATGCTGTGCCTTCTCCCCTGATGGAAAAGCCTTAGCGGTGGGTCTGAACGATGGCAGCTTCCTAGTGGTGAACGCAGACACATTGGAGGACATGGTGACGTTTCACCACAGAAAGGAGATCATCTCTGACATCAGGTTCTCTCAAGATGCTGGAAAATACCTCGCTGTGGCCTCCCATGATTCATTTGTGGACATTTATAATGTTCTGACCAGTAAGAGAGTGGGAATCTGTAAAGGAGCGTCCAGCTGTATCACACATGTGGACTGGGACGTCCGtgGAAAACTGCTTCAAGTCAACACTGGTGCCAAAGAGCAGCTCTTTTTTGAAGCTCCGCGCGGAAGACGACAAACTATCAGCAGTTTAGAGtttgAGAAAATGGAATGGGCCACCTGGACGTCAGTGTTGGGTGGCACCTGTGAGGGCATCTGGCCGACTCTGAGTTTGGTCAACGCCTCGTCTCTCACCAAAGACAAGAAGCTTCTGGCCACTGGAGACGACTTCGGCTTCGTCAAGCTCTTCAGCTTCCCCTCCAAGGGTCAATTTGCCAAGTTCAAGAAGTACGTGGCCCACAGTGCCAATGTGACGAATGTGCGATGGTCCAATGATGATGCTATGCTGCTGTCGGTGGGCGGAGCCGACACAGCCCTCATGATCTGGGCGAGGGAGGGGATTGGTCCACGTGAGAGCAAAGTAGTGGACAGTGAGGAGTCGGATGATGACGCTGAAGAGGACGGAGGGTACGACAGTGACGTAGCTCGGGAAAAAAACATGGATTACACAACAAAGATCTATGCTGTTAGTATAAGACAGATGACTGGAGTAAAGCCACACCAACAGCAGAAGGAGATACTGGTGGATGAACGACCTCCAGTGAGTCGAGCCGCACCGTTACCTGACAAACTGGTCAAGAACAACATCACCAAGAAGAAGAAGACGGTGGAGgagcTCTCTCTGGACCATGTGTTTGGATACAGAGGATTTGATTGTCGAAACAACCTTCACTACCTCAATGATGGAGCCGACATCATCTTCCACACGGCTGCTGCTGCTGTCATCCACAGCCTCTCTGCTGGTACTCAGAGCTTTTATCTGGAGCACACGGACGACATCCTCTGCCTGACCGTCAACCAACATCCCAAATACCAGAACATCATCGCCACGGGTCAGATCGGCCTTGCACCGTCCATACATGTGTGGGACGCCATGAGTAAACAGACAATGTCTGTGCTGCGCTGCGCTCATGCTAAAGGCATCGGATACGTCAACTTCAGCGCCACGGGGAAACTGCTGCTGTCTGTGGGAGTGGATCCAGAACACACCATCACTGTGTGGAGGTGGCAGGAAGGCTCCAGGGTTTGCAGTAAAGGTGGTCACACAGACAGGATCTTCGTGGTGGAGTTCAGACCTGATTCAGACACTCAGTTCGTGTCGGTGGGAATCAAACACATCAAGTTCTGGACGCTGGTTGGAGGATCTCTGCTGTATAAGAAAGGAGTGATCGGAGCGGTGGAGGACGGACACATGCAGACCATGCTCTCAGTGGCATTTGGAGCTAATAACCTGACGTTCACCGGCGCCATAAACGGCGATGTGTTTGTGTGGCGGGAACACTTTCTGGTGCGTGTGGTGGCTAAAGCTCACACTGGCCCCGTGTTCACCATGTACACCACACTCAGAGACGGACTCATTGTCACTGGAGGAAAAGAGAGACCGACTAAAGAGGGCGGCGCGGTGAAACTGTGGGATCAGGAAATGAAGAGATGCAGGGCGTTTCAGCTGGAGACTGGACTTCCTGTCGAGATCGTCAGATCAGTGTGCAGAGGAAAGGGGAAGATCCTGGTGGGGACGAAGGATGGAGAGATCATGGAGGTGGGAGAGAAGAACGCAGCCTCAAACACCATCATAAACGGACACACGCAGGGACGGATCTGGGGTCTGGCCACACATCCCTCCAAAGACGTCTTCATCTCAGCCAGCGATGATGGAACCATCCGCTTCTGGGACCTCGCAGATAAGAAACTTTTGAATAAAGTGAGTCTGGGTCACCCGGCGAAGTGCACGGCGTACAGCCCGAATGGAGAAATGGTGTCTATTGGGATGGAGAATGGAGAGTTCATCGTGCTGCTGGTCAATTCACTGACTGTATGGGGCAAGAAGAGAGACCGCAGTGTGGCCATCCAGGACATACGGTTCAGTTCTGATAACCGTCTGCTGGCCGTCGGCTCGGTGGAGTCTGCTGTGGATTTCTACGATCTCACTCTCGGCCCGTCGCTCAACCGCATCGGATACTGTAAAGATATTCCTGGGTTCGTCATCCAGCTAGACTTCTCTGCCGACAGCAAATACATCGAGgtctCCACGGGCTCATATAAGCGTCAGATTCATGAGGTTCCCAGTGGTAAACTGGTCTCAGATCAGGCTCTGATGGACAGGATCACATGGGCGTCGTGGACCAGTGTTCTGGGGGACGAGGTGTTGGGAATCTGGCCTCGTAACGCAGAGAAAGCAGATGTCAACTGTGCCTGTGTGTCTCACGCTGGCATCAACGTCGTCACAGGAGATGATTTTGGGCTCGTGAAACTCTTCGACTTTCCCTGCTCAGAGAAATTTGCCAAACACAAACGTTACTTCGGTCATTCTGCTCATGTGACCAACATCCGCTTTTCTTATGACGACAAGTATGTGATCAGTGTAGGAGGCAACGACTGTAGtgtgtttgtgtggaggTGTGTGTGA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-090512-5 Orthologous to human EML6 (EMAP like 6).

Ensembl:

ensembl_id ENSDART00000181513

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008869 lncRNA downstream 116119 42809514 ~ 42817704 (-) True XLOC_004365
TCONS_00008497 lncRNA downstream 179823 42752901 ~ 42754000 (-) False XLOC_004364
TCONS_00008496 lncRNA downstream 188643 42742534 ~ 42745180 (-) True XLOC_004363
TCONS_00008495 lncRNA downstream 197975 42735264 ~ 42735848 (-) True XLOC_004362
TCONS_00008494 lncRNA downstream 781250 42151444 ~ 42152573 (-) True XLOC_004356
TCONS_00008870 lncRNA upstream 59620 43061882 ~ 43062986 (-) True XLOC_004368
TCONS_00008871 lncRNA upstream 199273 43201535 ~ 43204207 (-) True XLOC_004371
TCONS_00008287 lncRNA upstream 226150 43228412 ~ 43230364 (-) True XLOC_004372
TCONS_00008872 lncRNA upstream 453207 43455469 ~ 43457258 (-) True XLOC_004373
TCONS_00008873 lncRNA upstream 459133 43461395 ~ 43466520 (-) True XLOC_004374
TCONS_00008278 mRNA downstream 14852 42910904 ~ 42918971 (-) True XLOC_004366
TCONS_00008277 mRNA downstream 172530 42754776 ~ 42761293 (-) True XLOC_004364
TCONS_00008276 mRNA downstream 178715 42750214 ~ 42755108 (-) False XLOC_004364
TCONS_00008275 mRNA downstream 180939 42746369 ~ 42752884 (-) False XLOC_004364
TCONS_00008274 mRNA downstream 183197 42746369 ~ 42750626 (-) False XLOC_004364
TCONS_00008283 mRNA upstream 100159 43102421 ~ 43104475 (-) True XLOC_004369
TCONS_00008284 mRNA upstream 132936 43135198 ~ 43200994 (-) False XLOC_004370
TCONS_00008285 mRNA upstream 132937 43135199 ~ 43137712 (-) False XLOC_004370
TCONS_00008286 mRNA upstream 144090 43146352 ~ 43226255 (-) True XLOC_004370
TCONS_00008288 mRNA upstream 467914 43470176 ~ 43473824 (-) True XLOC_004375
TCONS_00008250 other downstream 1558697 41375011 ~ 41375126 (-) True XLOC_004339
TCONS_00008244 other downstream 1849460 41078191 ~ 41084363 (-) True XLOC_004334
TCONS_00008236 other downstream 2237687 40678213 ~ 40696136 (-) True XLOC_004327
TCONS_00008222 other downstream 2751027 40182681 ~ 40182796 (-) True XLOC_004319
TCONS_00008210 other downstream 3843832 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008295 other upstream 1121065 44123327 ~ 44123458 (-) True XLOC_004381
TCONS_00008303 other upstream 1334895 44337157 ~ 44339220 (-) True XLOC_004385
TCONS_00008317 other upstream 1604589 44606851 ~ 44613734 (-) False XLOC_004396
TCONS_00008372 other upstream 2429271 45431533 ~ 45435014 (-) False XLOC_004416

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00001466 True 1869 mRNA 0.58 13 CM030143.1 4943589 ~ 4955143 (-)