RNA id: TCONS_00008275


Basic Information

Item Value
RNA id TCONS_00008275
length 1797
RNA type mRNA
GC content 0.37
exon number 2
gene id XLOC_004364
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 42746369 ~ 42761293 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAAACACTGCTATGCTCTGAAGTCTGTCAGTTACATGGATGAAGACACATCTGGTACCATTTATACCAGAAATCTGCGTAGAAATAACCctgaaacagatttttttgttttaagtgaTGTTGCTGAGATTAAAAGGTCAAGAACTAAAACAGGAAAGCTCATCAAACATGAGATTTCAAAAAAACCAAGTGCGCAATTTGGATCTGTTAGTGCTTCTGGAAGCGGTCTCATAGGCATGGCTGACACTGTTGACAGACCAGCAGACACCACTACAGAAGGTGTTTATGTTAACACTGGTGCATATGCAACTGGTAGTGAAGATGAACCAGGAAAGAGACTCCCCAAAGCTGGAGCTTATGCAGAAGCAGGAGTTGGACGAGCTCGAGCTGAATTCAGCATTTATGAAGCAGAAGCTAAAGGCCCCAATGCATCAGCTATAGCTTTAGCCAGTACAGCTCTAACAGCATCAGCGATGGCTCGAGCTGAAATCGGCAGTGTTTCAGCTAGTGCTGGTCCAGTCGGTGTGAAACTGGGACTTGGAGTCGACACCGGTGTATCTGTTGGTGTGGATGGCCTAGAGGTCAAACTCCTGGGATTTGGATTCAAGTTTGGTCCAAGAACCAGTATTTCTCTCCTGGGATCAGAAGTGTCATGTTCAATCATGTAGACATACAGGTATTAAATACCTTCCGATATTTGTGCATTACATTTTAATACCCCCATCATTATATATTCATCATATATTATAGTTTAACTATAGTAAAatgttttgtgtgattttttttaattttacaattaaGACTTATAATGCCTGTTAAAGGTATAAATGAAATCAAAAGTTGTCCCAGCATATTATTTAATACAGGATGTGGgccaaaaaaatattttcaaggtGTGCACCTTAAAAGAGTTAagggtaaatatttatttttggtttttgcAGGTGGCTTTTAGTAGATTCAGTAGACGTCTGGATTCAACCTTTGTGAAGATTAATGGACAACAACAATTGCAGAAGATGACGACTAATGATGCTAACAACCTCTATACCTACTATAAATCCTATTCTATGttcttttcattatatatatatatatatatatatatacacacacacactacttctgattgattaatttttaattaatgacTGGATGACATTTCACACTTGTGAATCATAAGAGTAAACACAATGTAGAGCTGCTAAAAGAACCACTTACTGTAATGTGTCCACATGTATTGTTAGcgagaaagaaaaatgaaagcaaTATATAGATCATCATAAGATATGAAGATTAAATAAACTACTTAAATTATTTCTTAAGTTGCAGCTGGATATCACAGATAGTTGGAATAGATCTTTTGATTCCAGTTTCTTAGCAAATCCTGTCTTCTGCACATGATAAAATGTATTACTGAGACATAATATGCAACTGTCAATCAATAAAACAACACTGCTACAGTATGTCATGGTGTGGTTGTCCTCAAAATCGCCGGGATTTTTATCCTGATTTAAAATTAGAAGTGTTTATACAGTACCACTATAATATGGCTGTGTACACTATTCCACACATTGagtgtccaaacagcttacaaaagtttgTCTCTCATGATAGGAACCCTTTCATCTGTTTATAGGATTCAAAAGTCTCTTAAATGACTCAGAGTGTCAGTGCTCATAAAGTGAATCATTAATCCAAACCCTGAGGTTTACAGTAAGTGTATGAGAGCCAGGAGGTAGccctttcactttcacttttatgAAGGAAAGTCCCAAGTTCTCCCAAGCGATTCC

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1230 No description available

Ensembl:

ensembl_id ENSDART00000186025

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008496 lncRNA downstream 1189 42742534 ~ 42745180 (-) True XLOC_004363
TCONS_00008495 lncRNA downstream 10521 42735264 ~ 42735848 (-) True XLOC_004362
TCONS_00008494 lncRNA downstream 593796 42151444 ~ 42152573 (-) True XLOC_004356
TCONS_00008868 lncRNA downstream 622098 42122748 ~ 42124271 (-) True XLOC_004353
TCONS_00008493 lncRNA downstream 622117 42121855 ~ 42124252 (-) False XLOC_004353
TCONS_00008497 lncRNA upstream 17 42752901 ~ 42754000 (-) False XLOC_004364
TCONS_00008869 lncRNA upstream 56630 42809514 ~ 42817704 (-) True XLOC_004365
TCONS_00008870 lncRNA upstream 308998 43061882 ~ 43062986 (-) True XLOC_004368
TCONS_00008871 lncRNA upstream 448651 43201535 ~ 43204207 (-) True XLOC_004371
TCONS_00008287 lncRNA upstream 475528 43228412 ~ 43230364 (-) True XLOC_004372
TCONS_00008273 mRNA downstream 7221 42731890 ~ 42739148 (-) False XLOC_004362
TCONS_00008272 mRNA downstream 16306 42720203 ~ 42730063 (-) True XLOC_004361
TCONS_00008271 mRNA downstream 192079 42532464 ~ 42554290 (-) True XLOC_004360
TCONS_00008270 mRNA downstream 220919 42506052 ~ 42525450 (-) True XLOC_004359
TCONS_00008269 mRNA downstream 273428 42466834 ~ 42472941 (-) True XLOC_004358
TCONS_00008277 mRNA upstream 1892 42754776 ~ 42761293 (-) True XLOC_004364
TCONS_00008278 mRNA upstream 158020 42910904 ~ 42918971 (-) True XLOC_004366
TCONS_00008280 mRNA upstream 176663 42929547 ~ 42980535 (-) False XLOC_004367
TCONS_00008279 mRNA upstream 176663 42929547 ~ 42980535 (-) False XLOC_004367
TCONS_00008282 mRNA upstream 180939 42933823 ~ 43002262 (-) False XLOC_004367
TCONS_00008250 other downstream 1371243 41375011 ~ 41375126 (-) True XLOC_004339
TCONS_00008244 other downstream 1662006 41078191 ~ 41084363 (-) True XLOC_004334
TCONS_00008236 other downstream 2050233 40678213 ~ 40696136 (-) True XLOC_004327
TCONS_00008222 other downstream 2563573 40182681 ~ 40182796 (-) True XLOC_004319
TCONS_00008210 other downstream 3656378 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008295 other upstream 1370443 44123327 ~ 44123458 (-) True XLOC_004381
TCONS_00008303 other upstream 1584273 44337157 ~ 44339220 (-) True XLOC_004385
TCONS_00008317 other upstream 1853967 44606851 ~ 44613734 (-) False XLOC_004396
TCONS_00008372 other upstream 2678649 45431533 ~ 45435014 (-) False XLOC_004416

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_01887307_01897613.mRNA True 1243 mRNA 0.38 2 CI01000306 1887068 ~ 1897981 (+)