RNA id: TCONS_00008278


Basic Information

Item Value
RNA id TCONS_00008278
length 6966
RNA type mRNA
GC content 0.40
exon number 2
gene id XLOC_004366
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 42910904 ~ 42918971 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGTCGCTCAGATGAATGAGTGGAGCTCCTCAGTCGCGCATGAAGACGCGAGCGAGAAAGCAGCCGCTCAACGGAGCTCAGAATGCGGATAAAACTGTAAACTCAGCCGCCTCCCGTTCCCTGTGACGCCAACACTGAACGGGAAACATGTGGAACACTAAACGACGAATATGCCTTCACAGCACAGGAGAGTTATGGGGTTTGTTCATTCTCCTCTTGTACAGCATTCCCTTCTCCTGCTCTTCAAATTTCAGTCACCTCATCTATAAGATAAAGGAAGGATTACCAAAAGGAACACTTATAGGGGCTATCAGTGCGGACTTAACCCTGGATCTTTCCGTCAATCCTTCTCGCTCATTCAGCCTGGAGCAAATGACTACCAGCGAGCACTACGTGAATCTGAATAGCACCACCGGGGAGCTGTTCACATCTGCGATAGAGATTGACAGAGAGTCTCTATGTGCTGAATCCCACGAGGGACAGGGCTGTGCAATCTTCCTGGACGTGCTAATCCTTCCCCAGCAGTACTTTCAGCTGGTTAAGATTAAAATCATCATAGAGGACATCAACGACAACAGTCCGCATTTCCCCATGGATGAAATCCGGCTGTCTGTGCCAGAAAACGCACCTGTTAATGCACGGTTTGCGGTGGAGCAGTCCGCAGTGGATCCAGACATCGGGATTCACAGCGTTCAGACCTACTGGCTTAATAATGACTATGGAGTTTTCACGCTGGACGTAGAGGAGAACGAAGGAGGAGAATTGACGCCGTTTCTCATCCTAACCGAGTCTCTTGATAGAGAGGCGCGGGCTGAGTATGTGACTGAAATTATAGCAGAGGATGGAGGGTCTCCGCCTCGTTTTGGCAATGCAACTTTGAGGATTATCATTAGCGACGTTAATGACAACTGCCCCAAGTTTAGAGAGTCTCAAGTGAAAGTGACTCTGTATGGAAATGCCACTAAAGGCATGCAACTGGCTCGTCTACAAGCTTATGATCCAGATGAGGGAGCGAACGCCTTGATTACGTATACGTTCAGTGAACGGGTCAGCCAGGAAAGCAAAAGCTTATTTCACTTGGATACAACGACTGGAGTTCTGAAACTAGCAGGAAAGATCAACAACAACAGTGCGAAGCTATACAAGATAAACATACTAGCCAATGGGGCGGGGTGTATTCCTGACGTTGCTATGGTTAGCGTGCATGTCATCAAACAACTCTCTGGTCCTCCGACGGTTGTACCGCGTTACATTGCGTTTGAGAAAGATGGCGTCGTGAGCTTAAGCGAATCTGAgcctccgttttcccccattgCTTTTTTTACCATCAAAAACACCGAGGCCCAACAGAAGCTGGAGTGTTTTCTGGAAAGTGCAGGTCCTTTTAGGATTGTGCCTTATCAGGGTTTAAAAAACGAGTACTTGCTGGAAACCACTGATGTCCTGGATTATGAGCTGCAACAGGATTATGAAATAGTCATTGTGGTGCGTAATTCCCACGGATTAGCAGTTAACACTGTGGTGAAAGTCCATGTGTTGGATGTCAACGACAACGCTCCGGTTTTCAAGCAGTCCTTCGTTGAAATCGCCGTTGAGGAAAATAACCCACCGAATACGTTCCTGGCTCAGCTTCAGGCGAGCGATGCGGATAGTGAAAGCAGAGGGCAGGTGTATTATCAACTTGGAGCGGACGCTCCCACCATTTTTAACATCGATAGCTACACCGGAGTGCTAACAGTATCAACATCTCTCGACCGAGAGGAAAAGGAGACCTACCGCTTCATGGTTCGAGCTTTAGACAGGGGAACGCCAAAAAAGGAGTCAATCGCGACGGTGATCATCACCGTCCAAGATCGCAATGACAACAGCCCGCGATTCATCAACAAAGACTTCACTTTCTTTGTACCAGAGAACTTTCCAGGATTTGGCGAAATCGGCGTGCTTACAGTCACAGATGCTGACGCCGGAGAAAACGGCTGGGTCGCTCTATCAATCCTCAACGGAAGTGACATCTTTGTTATTGACACCGGACGAGGAGCTCTAAGAGCCAAAACACCATTGGATCGAGAGCAACAGGGGACGTATTACGTATGGATCGAAGCTATTGATGGAGGAGAGCCTGCGCTTTCTTGTGTCACAATGGTGACCGTTCTCCTCCTGGACGTCAATGATAATCCTCCAACAGTTCTCTTTCCGCAATCCAACCAGTCCTTCATGCTGGTGCTTCCTAGCACAGTTCCGGGAACATCTATAACTGAAGTGTACGCTGTGGATCGGGACACGGGAATGAATGCTGTTATTGCTTACAGCATTATTAAGAGAACTGACGGAGAACCAGGGTCGTTTGACATCGATCCGTACACTGGAAACATCACCCTGAGGAAAGCCTTGAACAGTCGGGGGCTTTATAGTTTATGGGTTAAAGTTCGAGATCACGGTCAACCTGAGCTCTACTCCACCGTGCTGGTTAACCTGTTTGTGAATGAAACGGTCAGCAATGAGACGCTCATTCAGAGTTTGTTGCCGAGAGTTGTGGATCTGGATCACGGTGAAGCTCCTCCGGTTAAGGAAGGGAGAGAGGGAGAACGAGTGCCAAATATGTGCAACGAGTATAAAGTCATACTGCTTGCATTGACGGCGACTTGCATGGGACTGTTTTTGACTGTCGTGTCGTTGGTGACGTACATTTGCTGCAAGAAAAGAAAGACGAAAAAGAAGAGGCAAGGCACCGAGACTCTCAAGCTCAACCATGAGATGGTGGAGAAAAACCTACTGGAGATTTCAAACATATGACAGTAAACTGCTCAGCAGGCAAAATCTGCTTGTACTGCCCAAACTattcactgcaaaaatgcttgaCAATGAGTtttcgtcttgtttctagtccaaatatctaaacattcctaAATCAATGTGCATTCTAtagacagctttttaaaaaaatggtcaaTTATATAAGCAAGTTTttgcttaaaacatgctaaataatctGTCGGTGAGGTAAGCAAAGCACATTTATTCCAgatattattttgatattttcccagagatgggttgcagctggaagggcatccgctgcgtaaaaaacttgctggataagttggcggttcattccgctgtggcgaccccagattaataaagggactaagccgacaagaaaatgaatgaattattttgatATAAGGGTGCCACGGGGGCTCTGTGATtagcaataaggttgctggtttgggTCCTagttgggcatttctgtgtggagtttgcatgttctccctgtgttggtgtgggtttcccccacagtccaaaaacatgtggtataggtgaattgagtaagctaaaatagcccgtcgtgtatgtgtgtgagtgagtgtgtgtgtgtgaatgtttcccagtaccgggttgcagctggaagggcatctgctgcataaaacatatgctggataagttgtcggttcattccgctgtggcgtcctttgattaataaagtaactaagctgaaaagaaaaagattATTTTGATATAAGGGcaccatggtggctcagtggttagcactgtcgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAaggtggtcataaacaaataatttctcaattAAAATGAGTAGTGGCTTTGACCTGGAAATAGTATTTCAGGCTTATCAAGTGGATAGGTAAAtaggattaactaaattggctgtagtgtacgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaatgagttatgggtgtttcccagtactgggttgtgggtAAAAGGGCATGAGCTGcacaaaaacatgctggaatagttggtggttcattccgctgtggagacctctgataaatcagagaataagccgaaggaaattaaacaagtcaatattttaatattattttcagaAGCTTATTTTGCTTAACTAATTTGCAggtaatttagcttgttttgagggAAAACTCAACTtgcttttctgaaaataaaacaaaaatatttactttttagactttttagatatttggactaaaaacaagacaaaaactctaagaaaaTCCTTTTATGCAGTGTTCTGTTTACAATGTGTTTTGTGCATCTTCATGTCGCTGAAGTataaactgattttaaaatatgatgtatatattGTGAATATGTTTTATAACTATGATGAAAtcctcaaatatatatatatatatatatatatatagacatgatCGTTGCAAGATTTTGCTATTTGCTGCCCAACATGCTTTTAATGTAAATGATCTGACAACGGTGCCCTCAGCAGTGTGTTGTGTCAAATTGTCCTCTTTTATATGCCTGTTTTTGAATCCCAATGCAGTCGCCTAAGGAACATCAATCTTCCCAGTGAAAAGCAGTTCCTGTGCTCCACCTGTTTGTCAAACACTCAAAAAATGGCTTCTCGTGTCTAGttcctagtccaaatatctacaattccttaaatcaagaagcttttctagacatttttgttttattttcagtagaAAACAAGTAATAAAGCGAGATTTTCCCTTAAACAAGCTAAATGATCTGCAAGTGGAGTAAGTCAAATAATAGTAATTCTGTTTACCCTACTGGCAGattattaagcttgttttaaggaaaatttattaaaatttattttaaatattagttatttttatattgaatttaagcatttttttcttcagaaaacaaGATTTAGTTGTCTGGAAAACGTTTCTTGatttaaaggtgacctattatgcctcttttcACAAGATGTAAAATACGTCTCTGATGtctccagagtgtgtgtgtgaagtgtcagctcaaaatagcacacagataatgttttataacgctctgaaactgacccttttaagATTTGATCCTAATTGCGGCGTTTTGGTCACTgcctctttaaattcaaatgagattgtgctcttttcaaaagagggcggagctatgaaCATCAATGTGTCAGTAtagcggcagattcaaaactAATGACAGACAGCTGCTTCTTAtttagggctgtttatgctaatgagggagacgTGGTCATTAGTGGGCGGacctttccccctctgatgacatcattcAAAGGGAGAATGTTAAAGTGTTTCAGCAGActgtttggtcccactttatattaagtggccttaactaactaatatgtacttacacaggaattaatagtttgttgcaatgtacttattgtgtaaatacatgtatttactgtgtacttatgcttgattaagtacatgtatgtaattacatctgtatttaacttctgtaattacatttgtaaatacactgttgaccccCCTTTAAACCTTAACcctcccttaaacctacccacaccaccaaacctgtccataacccaacctctatccttactcaaaagcaccacaagtgttctcaaatacatcataaacacagtaagtacattgtatttatttttttgatgtaagtacatagtaaaggacacttaatataaagtgggaccgactgtttttatcaagtgtaattaaaaaaatacaattaatttattgTTCTGTTTAGAAGCTGACTATATTCACTGAtgacacacaactgtttaaaccccttatatacttgatttttgcataataggtccccttttttCGATAGTTGGACTAGAAAGAAAAGGCTTTTCTTGCAGTGTAACCATTAAGAAAAGCCTTGAAAACAGAAGAAATCATTGGTAGATTGACTTCTCAGCTGTTTCTCTGTGATTAACAGATGTTTTTTTGGACACTTTGTGTTTGCTGTAGGATACTAGGCTGGTGTGCAATGTCTCTTGAAACCCAAAATGTCTTGGTTTGTTCAGATCTGTTTTGCGACAAATTAACTTTTGTGCAAAACATTTCGTCAAATAAGCTGATGCTACATTTTtctgaacgttttttttttctgatgtgtaCACAACGAATTCATGAACATTAAAGtgctttattttcttatttttagctTGGATCTGACATTATTTCATAAGGGTTTCCCAATGATGAGGtgttaatattacaaaatattagaaaaaattcACACTTTACTATAAGCTTCAATGcggtaacactttaatttgatggtccatttgagtattagtagactgtctgcttaatatctgctgaaacTGCTGCTGAACAGACATtatactgactataagaaactttgcaaatacatgtcaacttacactaacactaacctgacagtctacttataatctggaGTAAATatagtaaagtaaaataatagtaattctGTTTACCCTCCTGGCAGactttttagcttgttttaaggaaaaacctgCTTaaactttactttattttaattattagttatttcaacacaatctcacggcaattcgtaactttttcatttagtggctaattcgtaataattcgtacgatctaattcgtacaatttagtacgatttgctcatcccccaatgacggttggggttaggggtggggtcaggtgccacgcctcctttttaaaatcgtactatttcgtacgactgaactggtacgaattcgtacgaattagccactaaactggcaaaacgtaaaatacttacgttttctcgtgagatcaggctggttattttTATATTGACTTTACGCATTTCTTTCTTCATAAAACAAGATTTAGTTGTctggaaaatgtttcttgatttaaaggtgacctattatgcctctttttacaagatagcacacagataatgttttataactatcTGAAACGGACCCTTTTAGGATTTGATCTTAATTGCAGTGTTTTGTAATATTCTGGAATATTTACCAGAAATAttccagcagctagctctctgcaactctcacatggtcgcccactgaaactaagcagggctgtgcccggtctgTACCCTG

Function

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000052912

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008869 lncRNA downstream 93200 42809514 ~ 42817704 (-) True XLOC_004365
TCONS_00008497 lncRNA downstream 156904 42752901 ~ 42754000 (-) False XLOC_004364
TCONS_00008496 lncRNA downstream 165724 42742534 ~ 42745180 (-) True XLOC_004363
TCONS_00008495 lncRNA downstream 175056 42735264 ~ 42735848 (-) True XLOC_004362
TCONS_00008494 lncRNA downstream 758331 42151444 ~ 42152573 (-) True XLOC_004356
TCONS_00008870 lncRNA upstream 142911 43061882 ~ 43062986 (-) True XLOC_004368
TCONS_00008871 lncRNA upstream 282564 43201535 ~ 43204207 (-) True XLOC_004371
TCONS_00008287 lncRNA upstream 309441 43228412 ~ 43230364 (-) True XLOC_004372
TCONS_00008872 lncRNA upstream 536498 43455469 ~ 43457258 (-) True XLOC_004373
TCONS_00008873 lncRNA upstream 542424 43461395 ~ 43466520 (-) True XLOC_004374
TCONS_00008277 mRNA downstream 149611 42754776 ~ 42761293 (-) True XLOC_004364
TCONS_00008276 mRNA downstream 155796 42750214 ~ 42755108 (-) False XLOC_004364
TCONS_00008275 mRNA downstream 158020 42746369 ~ 42752884 (-) False XLOC_004364
TCONS_00008274 mRNA downstream 160278 42746369 ~ 42750626 (-) False XLOC_004364
TCONS_00008273 mRNA downstream 171756 42731890 ~ 42739148 (-) False XLOC_004362
TCONS_00008280 mRNA upstream 10576 42929547 ~ 42980535 (-) False XLOC_004367
TCONS_00008279 mRNA upstream 10576 42929547 ~ 42980535 (-) False XLOC_004367
TCONS_00008282 mRNA upstream 14852 42933823 ~ 43002262 (-) False XLOC_004367
TCONS_00008281 mRNA upstream 14852 42933823 ~ 43002262 (-) True XLOC_004367
TCONS_00008283 mRNA upstream 183450 43102421 ~ 43104475 (-) True XLOC_004369
TCONS_00008250 other downstream 1535778 41375011 ~ 41375126 (-) True XLOC_004339
TCONS_00008244 other downstream 1826541 41078191 ~ 41084363 (-) True XLOC_004334
TCONS_00008236 other downstream 2214768 40678213 ~ 40696136 (-) True XLOC_004327
TCONS_00008222 other downstream 2728108 40182681 ~ 40182796 (-) True XLOC_004319
TCONS_00008210 other downstream 3820913 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008295 other upstream 1204356 44123327 ~ 44123458 (-) True XLOC_004381
TCONS_00008303 other upstream 1418186 44337157 ~ 44339220 (-) True XLOC_004385
TCONS_00008317 other upstream 1687880 44606851 ~ 44613734 (-) False XLOC_004396
TCONS_00008372 other upstream 2512562 45431533 ~ 45435014 (-) False XLOC_004416

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_01387861_01391135.mRNA True 4094 mRNA 0.46 2 CI01000306 1387602 ~ 1392321 (+)