RNA id: TCONS_00008344


Basic Information

Item Value
RNA id TCONS_00008344
length 1044
RNA type mRNA
GC content 0.48
exon number 10
gene id XLOC_004408
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 45122147 ~ 45153006 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGACTGATTGTTTTgttatcaaaatgtatttttggtgTAATTTTCACGAATTCAGCGCGGTTTGTACCAATAGAATCAATCATAATAGATAATATAGATAGACAGCTGTCACACACACCCACGAGGTTAATGATTGACAGTATGTCAACAACTCATGAAGTTCACTAGCTAGTGCTGTTTCAAAGGTCCCTGCAAAGCAAAGCATCATCATGAGCGACTGGAAGAGCATGAGCAAAGATGAACTGGAGCTGCAGTATTCTCCCAGCCGCTGGTCACCCAGGATGTCTGCCGATGATGTCATCAGAGCTCATGTGTCCGCACTGAAATCAGgcacAGAGAGAGCTCGGTCGGTCACTCAGACTCTGATGGACGTCCCGTATGGAGAAGCAGAAGGAGAGAAACTGGACGTTTATCTTCCCAGCAGCTCCAGTCCAGACGTGCCGCTGGTGATTTATTTTCATGGAGGATACTGGCAGTTCCTTAGTAAGGATGAGTCTGGTTTTCTGGCTGTCCCGCTGGTCCAGAAGGGTGCAGTGGTGGTTGCCGTGGGTTACAGCATCGCTCCGAAAGGTGATATGGATCTGATGGTGTCTCAGGTGCGCAGGAGCGTCGTGTCTGTGATTCAGCAGTATTCACACATCAGTGGACTTTACCTGTGTGGTCATTCAGCAGGAGCTCATCTAGCAGCCATGGTTCTGTCCACTGACTGGACACAATATGACGTATCACCGCAAATCAAAGGTGCATTTCTGGTGAGCGGCATCTATGATCTTCAGCCCATTCTGTCCACATATGTCAACGAGCCGCTGAAAATGACAGAGGAAGTTGCATTAAGGAACAGCCCCAGTCGCTTCCTGTCACAGCTCAAGGTCTCGTCTGCTTCCTGTGACATCACTGTAGCTGTGGCGCAGAACGATTCGCCCGAGTTTCGCAAACAGTCGGAGGAATATTATAAAGCTTTGGAATCTGCTGGTCTTAAAGTGTCTTTTGAAGACGTTTCTGAAACGGATCACTTCAGCATCATAGAGCAACTCGTGGATGAA

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0017110 nucleoside-diphosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-166 Predicted to enable hydrolase activity. Predicted to be involved in tryptophan catabolic process to kynurenine. Predicted to act upstream of or within tryptophan catabolic process. Predicted to be located in cytosol and nucleus. Predicted to be active in cytoplasm. Orthologous to human AFMID (arylformamidase).

Ensembl:

ensembl_id ENSDART00000167540

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008501 lncRNA downstream 236897 44901303 ~ 44904326 (-) True XLOC_004404
TCONS_00008500 lncRNA downstream 247814 44889048 ~ 44893409 (-) True XLOC_004403
TCONS_00008499 lncRNA downstream 252191 44880825 ~ 44889032 (-) False XLOC_004403
TCONS_00008883 lncRNA downstream 282622 44852582 ~ 44858601 (-) True XLOC_004401
TCONS_00008498 lncRNA downstream 339482 44798661 ~ 44801741 (-) True XLOC_004400
TCONS_00008356 lncRNA upstream 53555 45206467 ~ 45207039 (-) True XLOC_004412
TCONS_00008360 lncRNA upstream 206200 45359112 ~ 45359656 (-) False XLOC_004414
TCONS_00008336 mRNA downstream 996 45122147 ~ 45140227 (-) False XLOC_004408
TCONS_00008338 mRNA downstream 2366 45126408 ~ 45138857 (-) False XLOC_004408
TCONS_00008339 mRNA downstream 5580 45127380 ~ 45135643 (-) False XLOC_004408
TCONS_00008335 mRNA downstream 141365 44953931 ~ 44999858 (-) False XLOC_004407
TCONS_00008334 mRNA downstream 141365 44953931 ~ 44999858 (-) True XLOC_004407
TCONS_00008349 mRNA upstream 6441 45159353 ~ 45171139 (-) False XLOC_004409
TCONS_00008350 mRNA upstream 8360 45161272 ~ 45171179 (-) False XLOC_004409
TCONS_00008351 mRNA upstream 9370 45162282 ~ 45171208 (-) True XLOC_004409
TCONS_00008352 mRNA upstream 21608 45174520 ~ 45185792 (-) True XLOC_004410
TCONS_00008353 mRNA upstream 34886 45187798 ~ 45199251 (-) True XLOC_004411
TCONS_00008317 other downstream 527489 44606851 ~ 44613734 (-) False XLOC_004396
TCONS_00008303 other downstream 802003 44337157 ~ 44339220 (-) True XLOC_004385
TCONS_00008295 other downstream 1017765 44123327 ~ 44123458 (-) True XLOC_004381
TCONS_00008250 other downstream 3766097 41375011 ~ 41375126 (-) True XLOC_004339
TCONS_00008244 other downstream 4056860 41078191 ~ 41084363 (-) True XLOC_004334
TCONS_00008372 other upstream 278621 45431533 ~ 45435014 (-) False XLOC_004416

Expression Profile

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