RNA id: AMCG00003562


Basic Information

Item Value
RNA id AMCG00003562
length 2109
RNA type mRNA
GC content 0.45
exon number 9
gene id AMCG00003562
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 9760860 ~ 9774097 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCGGCGCTAGTTGCAGGAAGCGGAGCTGCGGCACGAGCTGTAACGCTCAGTTTTGCAAAAACCACTGTCGCCTTTGTCaaacttatttcatttttgagTTCAGTAGTATATACAGCAGGTATGGAGCAGGATTTAATAAGCCTGAAGGAACAGCTGgcgaagaaagaaaaagagattgCCAGTTTAAAGGAGAATCTTGCACGTTTGCAAACGGATTCAGGgaataacaatgtattaattgataCACAAGAAAAGGCTGCAGAGTTGCCCCCCCTGAAAGAAAAGCCATCATTGTCCAACAAAGACATCATGAGATACAGCCGGCAGCTCCTTCTCCCAGAGCTGGGGGTTCAAGGTCAGCTAAACCTGGCCAAGACTTCAGTCCTGATTGTGGGATGCGGAGGCCTGGGTTGTCCGTTGGCACAGTACCTAGTAGCAGCTGGCATTGGCCGCCTGGGGCTCCTGGACTATGACGTGGTGGAGCTGAGTAATCTGCACAGACAGGTGCTGCACGGAGAGGACCGAGAGGGGCAGCCCAAGGCCCTGTCTGCTGCACAGTCGCTAAGGAGGCTGAACTCTGCTGTAGACTGTGTGCCCTATCACATGCAGCTAACTCCTGAGATCGCCTTGCAGCTCATTGGCCAATGTCTGTACCCGGTGCCCCCACCCCCAGAGACGGTGACTAACTGCTCCGATGGCGGGGTTCTGGGAGTGGCCTCCTACCGCCAGCAGCTTCTGATGTTTGATGCCCAGGAGGCTCGGTTCCGCACTATAAAGCTCAGGCCGAAGCAGGCCGGCTGTGCGGTCTGTGGCGAGGCCCCCACAATCACAGCGCTGCAAGACTATGAGGGTTTCTGCGGGTCTGCAGCTACAGACAAGGAGTATAAAGCAATCCTGGACAAGGAGGCTCCACACATACTCCTGGATGTACGGCCACCAGTAGAAGTTGACATTTGCCACCTGCCTTTCTCACTCATGTATGTCATCTGTAAGCTGGGCAACGACTCTCAGAAGGCAGTCCAGATATTACAGAAAATGTCTGGTGCAGAGCTGGAGTCTGTGATTGTAAAGGATATCCGAGGAGGACTGATGGCCTGGGCTCATAAGATTGACCAATCTTTCCCACAATATTAACGTGTATAGTAACgttttttcaaaatgcatctAGTCCTTTTTATTCTGTGGTTATGACCATTTTACTAATGTTTAACTGTGTTCTTTGCGGTTTCCTGTTGAGTTGACTAGTCATTTCTGCTAGAAGAGTTTTTCAGTGTAAGTATAGACCATTAGTCGAACCTTTAAACATCCTGCTATCTCACAGGGGTATTAGACCGTGGCTTCTGTCAATATTGACACATGCCCTGTGTCTAATGTTCATTTAATAAAGCACTTGCATATTGACTGGGCACATGTAACTAGGCCTATTCACAACTGGTGGTCTGTTTTATATACCCTAGCCCATTCTTCCCCCACTTTTGCAATATTTAAGCATCTTTCTAAATTCCTGTCCTGTCGCTGAATGGTTGAACTCCCTTTGTTATTGGcatgtgatatttattttcccattattGAAAGGCATCAAATATCCGTGTTACTAAGAGAACAGAGAGGCCAAAGCGTATTAAGAGAATCAGCTTCAAACACCTGATGTTGCAGTTTATCCACCTGTCTGCTTGTCTACTCTGTGGCCTAACGAATGTCTGACCTGACTATCTAGAACATTGCATTATTGTTCTTGTACACTTAAGATGTCTGCTTTCCCACAAAGAATGCCTTGTAGTCTTCCATtataaaaacagcacagttcTGTATAGTATTGATGACTGGTTGCTTAATTAAGAACATGTTTtagcttttaattttatatatatatttatatatctaagATACTATGTTGTTGGGGTTTCAGAGCAATCAGATAAACCACTCAAGCTTTTGCTCCTTTGTTTTATGTTGGTCCACATCTCTCCATTACGtttatacacacactctcaaagATATGTGTTTATACCTGTTGATAGAAAGCACTTCTGTGTATGCTTGTACAGGATGTAATATTCAGTGATACctcatttcaaaacattaaaaaagagaaaggtaaataaaac

Function

GO: NA

KEGG:

id description
K11996 MOCS3, UBA4; adenylyltransferase and sulfurtransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1863 lncRNA upstream 57382 9700557 ~ 9703478 (+) True G1574
TU1701 lncRNA upstream 654096 9100618 ~ 9106764 (+) False AMCG00003544
TU1676 lncRNA upstream 733228 9009297 ~ 9027632 (+) False G1430
TU1675 lncRNA upstream 738287 9009297 ~ 9022573 (+) True G1430
TU1677 lncRNA upstream 740642 9009297 ~ 9020218 (+) False G1430
TU2011 lncRNA downstream 462759 10236856 ~ 10238261 (+) True G1706
TU2056 lncRNA downstream 657567 10431664 ~ 10457765 (+) True G1747
TU2211 lncRNA downstream 1276054 11050151 ~ 11050644 (+) True G1855
TU2254 lncRNA downstream 1453862 11227959 ~ 11228275 (+) True G1891
TU2270 lncRNA downstream 1556942 11331039 ~ 11403029 (+) False G1902
AMCG00003558 mRNA upstream 220779 9538315 ~ 9540081 (+) True AMCG00003558
AMCG00003556 mRNA upstream 236415 9521395 ~ 9524445 (+) True AMCG00003556
AMCG00003557 mRNA upstream 241464 9511564 ~ 9519396 (+) True AMCG00003557
AMCG00003551 mRNA upstream 497550 9255872 ~ 9263310 (+) False AMCG00003551
AMCG00003547 mRNA upstream 581099 9172738 ~ 9179761 (+) True AMCG00003547
AMCG00003570 mRNA downstream 3587 9777684 ~ 9781756 (+) False AMCG00003570
AMCG00003569 mRNA downstream 46830 9820927 ~ 9853672 (+) True AMCG00003569
AMCG00003568 mRNA downstream 92003 9866100 ~ 9875843 (+) True AMCG00003568
AMCG00003571 mRNA downstream 118681 9892778 ~ 9894988 (+) True AMCG00003571
AMCG00003575 mRNA downstream 405245 10179342 ~ 10181960 (+) True AMCG00003575
TU1763 other upstream 497392 9255828 ~ 9263468 (+) True AMCG00003551
TU1569 other upstream 1108456 8649125 ~ 8652404 (+) True AMCG00003534
TU1202 other upstream 3265955 6487692 ~ 6494905 (+) True G1012
TU1883 other downstream 3411 9777508 ~ 9780902 (+) True AMCG00003570
TU2334 other downstream 1716088 11490185 ~ 11491443 (+) False AMCG00003606
TU2385 other downstream 1799634 11573731 ~ 11577329 (+) True G1989
TU2685 other downstream 3263340 13037437 ~ 13042597 (+) True AMCG00003648
TU2754 other downstream 3380963 13155060 ~ 13156627 (+) False AMCG00003655

Expression Profile