RNA id: TU1883


Basic Information

Item Value
RNA id TU1883
length 1173
RNA type TUCP
GC content 0.61
exon number 3
gene id AMCG00003570
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 9777508 ~ 9781756 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGATAATAAGATGCGCATGAACTAGCCAACTGcttgagaggaaaaaagaaagtttTGAAAGAAAGATTTCCGGGCGCTGCTGCGGGACGTCTGGCGACAGCGGCTGCAGATGCGCCGGGAGGGATGGCCGTGGTGTAGGAGCAGCCCTCCCGTCTGGTTCAAACACAAAAGCGTGTTTTCCAAAGCAATACACCGTTTGTGAAGAGGACGCCTCATCGACTAGGATTGTTTTGCTTGTAAGTGTGCTTTAAAACTTGCCGAAGAAACGAAAAAGCGAGGATGAAGTCGGAATCAACAGGCTGCTGCTGAAAGGAAAACTACTTTCAAATTGGACTTTATGAGGAATCGGCCAAGAAGCGCTAGCCCTTTGAAACTTTGAATGGTCGCCGCAAATTGGGATTCACACCAACATCTGAATATGCGTTTCTATGCGCGAAAGCGACGCTGCTGATTAACTGCAGGTCATTGTATCTGGATTTTGATCGCACCCTTAGAGCATCTGCATTAATCCCACAGAGGAGCCCGCAAGCATGGATCTACAGCCCAGCTATTGAACAAATCCAGAGCTTCTAAAGTCTCTGTATTCATTATTACTTCAACaataatatataggctatatatatatatgtatgcatgtatgtatatatatatatagcctatatatatatatatatatgtatttatttttttaacacagtaaTCATCTCAAAAACGAAAATCCAATGTCTGCCTGCAGCAGCTCATCTCTTCCATCCTTACAAAAACCATACCCCCTTTCTCAATATCCAGTTTCCCCGCCGACCCCTTCCCCGTCCCCCAGCCCGCCAGCAGCTCTCTATAGCCGCTTGTCTAATGGGAGCCTGAGCGCCCCGAGTCCCACCAACTCCCGGGGCTCTTTCCACGGGGTGTCTTTCCTGCTGCAGATCGGCCTGACCCGGGAAACTGTCACCATCGAGGCGCATGAGCTCTCCCTGTCTGCGGTCAAGGATCTAGTCTGTTCTATTGTGGACCAGAAGTTTAAAGAACAGCTTGCATAACAAAGTGGATACTTATGGAAAGTGCCAGAATATTACCATCACTGTTGGAGCCTTTGTTGATGATGCCATGCTTGGTCACTACAGTCAAAAACATGTAACTAACTGTTTGCCAATAAAGGGAACACTCTGTTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1863 lncRNA upstream 74030 9700557 ~ 9703478 (+) True G1574
TU1701 lncRNA upstream 670744 9100618 ~ 9106764 (+) False AMCG00003544
TU1676 lncRNA upstream 749876 9009297 ~ 9027632 (+) False G1430
TU1675 lncRNA upstream 754935 9009297 ~ 9022573 (+) True G1430
TU1677 lncRNA upstream 757290 9009297 ~ 9020218 (+) False G1430
TU2011 lncRNA downstream 455954 10236856 ~ 10238261 (+) True G1706
TU2056 lncRNA downstream 650762 10431664 ~ 10457765 (+) True G1747
TU2211 lncRNA downstream 1269249 11050151 ~ 11050644 (+) True G1855
TU2254 lncRNA downstream 1447057 11227959 ~ 11228275 (+) True G1891
TU2270 lncRNA downstream 1550137 11331039 ~ 11403029 (+) False G1902
AMCG00003562 mRNA upstream 3411 9760860 ~ 9774097 (+) True AMCG00003562
AMCG00003558 mRNA upstream 237427 9538315 ~ 9540081 (+) True AMCG00003558
AMCG00003556 mRNA upstream 253063 9521395 ~ 9524445 (+) True AMCG00003556
AMCG00003557 mRNA upstream 258112 9511564 ~ 9519396 (+) True AMCG00003557
AMCG00003551 mRNA upstream 514198 9255872 ~ 9263310 (+) False AMCG00003551
AMCG00003569 mRNA downstream 40025 9820927 ~ 9853672 (+) True AMCG00003569
AMCG00003568 mRNA downstream 85198 9866100 ~ 9875843 (+) True AMCG00003568
AMCG00003571 mRNA downstream 111876 9892778 ~ 9894988 (+) True AMCG00003571
AMCG00003575 mRNA downstream 398440 10179342 ~ 10181960 (+) True AMCG00003575
AMCG00003576 mRNA downstream 449219 10230121 ~ 10231671 (+) True AMCG00003576
TU1763 other upstream 514040 9255828 ~ 9263468 (+) True AMCG00003551
TU1569 other upstream 1125104 8649125 ~ 8652404 (+) True AMCG00003534
TU1202 other upstream 3282603 6487692 ~ 6494905 (+) True G1012
TU2334 other downstream 1709283 11490185 ~ 11491443 (+) False AMCG00003606
TU2385 other downstream 1792829 11573731 ~ 11577329 (+) True G1989
TU2685 other downstream 3256535 13037437 ~ 13042597 (+) True AMCG00003648
TU2754 other downstream 3374158 13155060 ~ 13156627 (+) False AMCG00003655
TU2954 other downstream 4637614 14418516 ~ 14419732 (+) True G2440

Expression Profile