RNA id: AMCG00005132


Basic Information

Item Value
RNA id AMCG00005132
length 7242
RNA type mRNA
GC content 0.50
exon number 52
gene id AMCG00005132
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 16106627 ~ 16158958 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCACTTGGAAACAGATCCGCTTATTGCTGTGGAAGAACTGGACACTGCGAAAACGACAGAAGCTTCGGTTCTTTGTGGAGCTCATTTGGCCATTGATCTTGTTCATTGGCTTGGTGTGGCTGAGAATCGCTAACCCACTGTACCGCCAGCATGAATGTCATTTTCCCAACAAAGCTATGCCCTCGGCAGGAGTCCTTCCCTGGATACAGGGGATGTTCTGCAATGCCAACAACCCTTGCTTCAAATACGCAACACGCGGCGAGTCTGATGGGGTTGTCTCCAACTACAACAACTCAATTCTGGCCCGATTCTACGCCGATTCTCAGGAGCTGCTCTTCTCAGAACCTGAATTCCAGCATTTGGGCCGAATGTGGGAGGAACTGCGAGTCATGGCCGAGTTCATGAACACACTGCGAACTAATCCAGGCATGATTTCAGGCCGCGGAATGAAAATCAAAGACATCCTGAAGGACGATGAGACCCTGACAGCTTTCTTATTGAAGGATGCTGGCCTGTCTAACTCTGTTGTTAATCAGCTAGTAAACGCCCAAGTTCGTCCTGAGCAGTTTGCGTATGGAGTGCCAGACCTGCAGCTGAAGGACATCGCTTGCAGTCAGACCCTCCTGGAGCGATTCATCATCTTCCCAACCCGCAGCGGTCTATATGTGGTGCACAATGCCATGTGTTCCCTGACACAGCAAAAGCTCCAGAGAATAGAGGACAAGCTTTATGCCAACGTGGACTTCTTCAAGCTCTTCCGCCTGCTCCCTGCCGTGCTTGACAACCATTCCCATGGCATCGATCTCCACTTCTGGGGCCGAGTGTTGTCCAATATGTCAGAGAAATTACAAGAGCTGGTGGAGAGAAGCAGCTTCAAAGATTTGCTTCAGGTTTTGCAGCCCCTTTTCCAAGATGGCGGCCCATCTTCCTTCACCCAGTTGATGAGCGCGGTGTCGGACATGTTCTGTGGGTACCCCGAAGGGGGTGGATCTCGGGTTTTCTCCTTCAACTGGTACGAGGACAACAACTACAAGGCCTTCCTGGGCATTAATGGCACCAAGGCACAATCCCATTACGTCTATGATAAAACCGCTACACCTTTCTGCAATGCACTGATGCAGAACTTGGAGTCTAACCCTGTTACCAAAATCGTGTGGAATTCGGTGAAGCCCCTGCTGATGGGAAAGATCCTCTACGCCCCCGACTCCCCCGCCGTGCGGCTGATATTGAACAATGCTAATACCACTTTTGAAGAATTGGAGAGACTGAGAAATATGGGAAGAGCTTGGGAGGAAGTGAGCCCTCAGCTGTGGCAGCTTTTTCAAAATAGTGTGCAAATGAACATGATCCGAGACACAATTAAGAACCCCACTGTAGCTGATTTAATCGACAGAAATCTCGAGGATACACATTTCTCGTCCAAAGACATTCTCAACTTCCTCTACAACGGGCCGCCCGAGGATCGCCCCGAGGACATGCCCAACTTTGACTGGAGAGACATCTTTAAGCAGACTGATCAAGTCATCCGCATGTTCAACCAATATGGAGAGTGTCTCAACCTCAATAAGTTTGTCGGCCTCGCTGATGAGGACCAGCTGACACACCAAGCTCTCTATCTCCTCGGAGAAAACAAATTCTGGGCAGGGCTCGTCTTCCTAGACACGTACCCCTGGACCGAGAAGTTGCCAACGCACGTGAAGTTCAAGATCCGGATGGATATCGATGCCGTCGAGCGCACGAATAAAATCAAAGACAGATACTGGGATCCTGGCCCGAGAGCAGACCCCGTGGAGGACCTACGCTACATCTGGGGAGGCTTTGCATATCTGCAGGACATGATTGAGCACGGCATTATCAGAAGCCAGATCAACAGAGACGTGCCACTGGGGGTCTACATCCAGCAGGTCCCCTATCCCTGCTATGTCGATGACCTCTTCATGTTGACCCTGAACCGCTGCTTCCCCATCTTCATGGTGCTTGCCTGGATCTACTCGGTGTCCATGATTGTGAAGAGTATTGTGCTGGAGAAGGAGCTGAGACTCAAGGACACCCTGAAAGCCATGGGTGTCACCAACGGTGTGATCTGGTACACTTGGTTCATTGATAGCTTCCTCATGATGGCCACCAGCACGGGCCTcctcaccatcatcatcatgacaGGCAAAGTGCTGAACTATAGCAACCCCAccatcctcttcctcttcttgttGACTTTCACTGTGGCCACCATCATGCAGTGCTTCCTCATGAGTGTGTTCTTCAACAAGGCCAATCTGGCGGCCGCTTGCAGTGGCATCATCTACTTCACCCTCTACTTGCCTCACATCCTGTGCTTTGCCTGGCAGGACCGCATTACCAAGAACATGAAGTTACTAGTGAGCTTATTGTCTCCAGTTGCCTTTGGCTTTGGCACAGAGTACTTGTCCCGCTATGAGGAGCAGGGCCTGGGCCTGCAGTGGGATAATATCCGCACCAGTCCTCTAGAGGGCGACGAGTTCAGTTTCCTCAGCTCTCTCCGGATGTTGGTGTTCGATGCTTTTCTCTATGGTGTTCTGGCGTGGTACCTAGATAATGTGTTTCCAGGGCAGTATGGCATAGGCCGGCCTTGGTACTTCCCTGTCCAGCATTCGTACTGGTCAGGGCCCGAACCCAATCAAACAGAGAAGCCCACTCCAGCGCCAGATTCAGAGAAACCAGTGACAGAGAATCCAGAACAGGAGAAGACTGACAGACTTGCAGAGAAGTCGGTGGTGGAAAACAAAGCGGAGAGCGGAGATGCAAGGGATACCGAGAAGAAGCCCTGCAAACACAAAGAGAGGCGCGAGaagattttaatgaagaaaGAAGAGAAGTTAAACACAGCACAAGCAGAAGAACAGGAACATAAAGAGAACGGGTATCAAaaggagacagacacagagatcccgtcagTAAACCCTTTCTTTGAGCCGGAGCCCACAGGGCTGGTGGTGGGGGTGTCGGTTCAGGACCTAGTCAAGATCTACAATGGCTGTGTTCAACCTGCCGTGGATGGGCTAAACATCAACTTCTATGAAGGACAGATCACCTCTTTTCTGGGGCATAATGGAGCTGGAAAGACAACAACCCTGTCAGTCCTTACTGGTTTGTATCCCCCAACCTCAGGGACGGCCTACATCAACGGGCAGGACATCCGCACTGACATGGACACCATTCGGCAGTCCCTGGGCATGTGCCCACAGTACAACATCCTGTTCCATCACTTGACTGTGgcagaacacattttattttactcccAGCTGAAAGGAAAGTCGAAGGCAGAAGCACGACTGGAGGCTGAAGACATGCTGGAAGACATTGGACTCCCTCATAAGAGGAACGAGGAGGCGCAGAACCTGTCAGGTGGCATGCAGAGGAAGCTGTCTGTTGCCATGGCTTTTGTGGGGGGTGCCAAGGTGGTCATTCTGGATGAGCCCACGTCTGGGGTGGACCCCTATTCAAGACGGTCGATCTGGGACCTCCTGCTGAAGTATCGGTCAGGCAGGACCATCATCCTCTCCACTCACCACATGGATGAGGCCGACCTTCTGGGGGACCGGGTGGCCATTATCTCCAAGGGCCGGCTCAACTGCTGTGGTTCCCCTCTGTACCTGAAGAACTGCTTTGGTCTGGGCTTTTACCTCACGCTGGTTCGCCGAATGCGGAGTGtcaaaccagaaaaaaacagagaagagAATGAATGTGACTGCAAAACAGATTGCTCCTGTTCCTGCTCAACCTGTACCCGATTTAAAGAAGAGTTTTATAAAGAGGTGACAAACCAGAACAAGGTTATGGAGCAAGAGTTGGATGGTGATGTGGAAAGTATCACCACCTTGATCCACCACCACGTTCCCGAGGCAAAGCTGATCGAGATGATCGGTCAGGAGATGACGTATCTGCTGCCCAACAAGGACTTTAAGCACCGGGCCTACGCCAGCCTGTTCAGGGAGCTGGAGGAGACACTGGGAGACATGGGCCTCAGCAGCTTTGGGATTTCAGACACCTCTCTGGAGGAGATATTTCTCAAGGTTACTGCTGATGGAGGAAGTCCAGCTGCCATGGCAAACCCAGAGCAGTGGATGTTACAGCAGCGGAAATCTCGCCCAAGTCTTACAGGGGAGAACAAGGTCACAATTAATGTTGAAGTTCCCGCAGGGGCCAATGGGCAGAATGCGGCTCCTAATGGCCACAGGGGCCCGGGTGACTCCGAGTTTGATGGGAATGAGGGGAAAGGGTCCCGGCAGATCAAAGGAGTCAGCTTGGTGTTGAAGCAGTTCTTCGCTCTGATGGTCAAGAGGTTCCATCACGCCACCCGAAGCCATAAAGATTTCTTAGCCCAGaTTGTCTTGCCTGCCAATTTTGTCCTCTTAGCTCTGATTTTCACCGTGATTGTTCCCCCTTTCGGTGAATACCCCAGCCTCATTCTGCATCCTTGGATGTATGGCCAGCAGTTTACATTCTTCAGTAATGAGTTGcatttgaataaacaaatgaagCACTTTGAAGATGTGCTGTTAAATAAACCTGGGTTTGGCACACGCTGCATGCAGGATGAACCGCTAATGAAGTACCCCTGTAGTAATGTCACCACAGACTGGGAGATGCCATCTGTCTCTCCAGATGTTGCCAACATCCTTCTGAATCCAGAATGGTCCCCATTGAACCCTTCACCCAGTTGCAAATGCAGCACTAGGAGGAAGTTGACAATGCTGCCAAGGATCCAGCCAACGACTGATATTTTATTGGACCTCACTGGCAGAAACATATCTGATTACCTCGTCAAGACATACCCCACCCTCATCAAAACCAGcttaAAGAGCAAGTACTGGGTAAATGAACAAAGGTATGGAGGGATTACCTTTGGGGGGCAGCTTCCAGTCCTTGATGTGAGCCCCAAAACAATAGTGGATGTACTTACCCAGATGGGACGCATGCTCAATGTCACAGGGggtaACTATTCCAAAGCAGTTTTAAGGGAAATAGGACCCTTCCTTAAATACATGGAGAGTGAATATAATGTTAAGGTGTGGTACAACAATAAGGGCTGGCACGCCATGGTTTCTTTCTTGAACGTCGCCAACAATGCGATCCTCAGGGCCTACCTGCCACGGGATGAAAATCCGGCAGAATATGGGATCACCACCATCAACCACCCTCTCAATCTCACCAAAGAGCAGCTCTCCGAAGTCACAGTACTAGCGACGTCTGTGGATGCAGTGGTGGCCATATGTGTGATCTTCGCCATGTCTTTCATCCCGGCGAGCTTTGTGCTCTATCTGATTCAGGAGAGGGTGAACAAAGCCAAGCACCTGCAGTTTGTCAGTGGTGTCAGTCCACTCATATACTGGATAGCCAACTTCTTTTGGGATATGATGAATTATTCATTGAGCACTGCTATGGTTGTTGGGATATTTATCGGCTTTGATAAAAAGGCTTACACCTCACCAACCAATCTCCCTGCCCTTGTTGCATTGCTTTTACTATATGGGTGGTCGGTCACTCCCTTGATGTACCCTGCCTCCTACCTGTTCAGTGTGCCCAGCACGGCCTATGTCTCTCTGTCCTGCATCAACCTGTTCATTGGGATTAACAGCAGTGCCGTTACTTTTATCCTTGAGCTCTTTGAAAACAACCGGACTCTGCTGAAGTTTAACGAGTTGTTGAAAAGAGGGCTGCTGATATTTCCACATTTCTGTCTGGGACGAGGTCTTATTGATTTAGCGCTGAACCAGGCTGTGACCGATGTGTATGCCAGGTTTGgtgaAGACCATAGCTTGGACCCTTTTAGTTGGGATTTTGttggaaaaaacatatttttcatggCAGTTGAAGGCTTTGTCTATTTCACTTTGAATATCTTGATTCAGTATCGCTTTTTCCTAAATCACTGGATTTCAGAAAGCAAAAGGCCTGCCATCacagatgaagatgaagatgttgcagaggagagagagaggatttaCAAAGGAGGAAGCAAGAATGACATCCTCAAAATTAAAGACCTGTCAAAGACCTATATGGGCAGAAGCAGACCAGCCGTGGACAGAATATGTGTTGGCGTTCCACCAGGGGAGTGCTTTGGCCTACTGGGTGTAAATGGTGCTGGAAAGACAACCACCTTTAAAATGTTGACTGGAGACACGGATGTCACTTCGGGGGAAGCGTCAGTAACTGATTACAGCATACTTACCAACATCCTTGACGTGCATCAAAACATGGGCTACTGCCCCCAGTTTGACGCCCTCGATGATCTGCTGACAGGTCGCGAACACCTCCAGCTGTACGCACGCCTCCGTGGCATCCCTGCAGGAGAAATCAACAGAgtgGTCGAGTGGGGAATCCAGAAGCTGGGCTTGTCTGAGTATTCTGAACGCAGCGCAGGGACGTACAGTGGTGGAAACAAACGGAAACTATCCACTGCTATTGCATTAATAGGCTGCCCTTCCCTAGTCCTTCTGGATGAACCAACCACTGGAATGGACCCCCACTCTCGCCGCTTCTTGTGGAACTCCATTATGAGCGTCATTCAAGATGGCAGAGCCGTAGTGCTCACATCACACAGCATGGAAGAGTGTGAAGCTCTGTGCACTCGTCTGGCCATCATGGTGAACGGGACTTTCAAGTGTCTCGGCACAATCCAGCATCTGAAATACAAATTTGGAGACGGCTATGTGGTCACAATGAAAATCAAGGCAGCTAAACCTCAAGTTGCGCCGGATCTGAACCCAGCTGAAGCTTTTGTGGAGGCCAACTTTCCAGgctgtgtgcagagagaaaagcactacaacacactgcagtacCAGATCCCATCTTCATCTCTGGCTAGGATCTTCCAGCTGGTTATAACCAACAAGGAGAAACTCAACATTGAGGACTACTCTGTCTCACAGACCACTCTTGATCAGGTGTTTGTGAATTTTGCAAAACAACAGTCAGGAGAAGATGAGGATATTATATTACATCCACGGGCTGCTGGGGCCAGACGGGAAATTAGGtgtgagAATCAgatttatttcttcaaatggCTTTCCATTGACTCACATTTTAATGCCATGCAGTCTCACCTCATAAGTGTAGTTTGGGCACGACACGAAGAAGAACAGCCACCTGATGAGCTCCGAGTACCCGAGATTGAGAAATCTGACACTCTCATTCATGTCTCCACTGGGGACAGGGGAAGCCCTCCACTGGCCGCTGCtgttaaaatagaaatgcaa

Function

GO: NA

KEGG:

id description
K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183140 lncRNA upstream 59433 16036612 ~ 16047194 (+) True G145593
TU183118 lncRNA upstream 151949 15953615 ~ 15954678 (+) True G145577
TU182931 lncRNA upstream 848964 15255889 ~ 15257663 (+) True G145435
TU182914 lncRNA upstream 862381 15242385 ~ 15244246 (+) True G145418
TU182891 lncRNA upstream 953888 15142484 ~ 15152739 (+) True G145398
TU183182 lncRNA downstream 70330 16229288 ~ 16231853 (+) True G145630
TU183314 lncRNA downstream 755057 16914015 ~ 16914225 (+) True G145731
TU183329 lncRNA downstream 777869 16936827 ~ 16937075 (+) True G145744
TU183377 lncRNA downstream 854519 17013477 ~ 17013714 (+) True G145782
TU183378 lncRNA downstream 859010 17017968 ~ 17018375 (+) True G145783
AMCG00005131 mRNA upstream 5138 16063952 ~ 16101489 (+) True AMCG00005131
AMCG00005121 mRNA upstream 63487 16038211 ~ 16043140 (+) True AMCG00005121
AMCG00005122 mRNA upstream 99798 15993366 ~ 16006829 (+) True AMCG00005122
AMCG00005120 mRNA upstream 115249 15979839 ~ 15991378 (+) True AMCG00005120
AMCG00005116 mRNA upstream 351209 15753182 ~ 15755418 (+) True AMCG00005116
AMCG00005126 mRNA downstream 193922 16352880 ~ 16365652 (+) True AMCG00005126
AMCG00005127 mRNA downstream 211705 16370663 ~ 16375456 (+) True AMCG00005127
AMCG00005130 mRNA downstream 489922 16648880 ~ 16649926 (+) True AMCG00005130
AMCG00005137 mRNA downstream 509768 16668726 ~ 16690410 (+) True AMCG00005137
AMCG00005134 mRNA downstream 533939 16692897 ~ 16745646 (+) True AMCG00005134
TU183002 other upstream 722015 15384243 ~ 15384612 (+) False AMCG00005105
TU182286 other upstream 3325457 12780580 ~ 12781170 (+) True G144940
TU181952 other upstream 4443259 11662681 ~ 11663368 (+) True G144677
TU180912 other upstream 8375627 7729389 ~ 7731000 (+) False AMCG00004870
TU180621 other upstream 10682506 5423703 ~ 5424121 (+) True G143626
TU183561 other downstream 1606299 17765257 ~ 17771525 (+) True G145932
TU184056 other downstream 3420615 19579573 ~ 19579807 (+) True G146305
TU184341 other downstream 4023396 20182354 ~ 20184643 (+) True G146519
TU184347 other downstream 4114555 20273513 ~ 20279786 (+) False AMCG00005272
TU184405 other downstream 4362691 20521649 ~ 20524819 (+) True G146575

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00030666 False 7493 mRNA 0.48 51 NC_007113.7 15203322 ~ 15294707 (+)