RNA id: AMCG00005120


Basic Information

Item Value
RNA id AMCG00005120
length 2579
RNA type mRNA
GC content 0.39
exon number 4
gene id AMCG00005120
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 15979839 ~ 15991378 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACGTGCCGTAGCAGTAGAGCGGTGACGTCACGCCCTGGTTTTTCGGTGTTGATGGATATTTTCGGGGGATTTTTATTCGGCGGTggtttaatagttttatttctcattatcCGCTTGCTGGTTGTTATTAGGCAGGGTGCAGAATGTAGGCCAGGAGCAAAGGGGGCCGTTAGCGTGCTTGTGGTGGCAGGGTCAGGGGGGCACACGACTGAGATCCTCAGGCTGATGGAGAGTCTCTCTCAGTCTTACATCCCAAGGCATTATGTTATGGCCGATACAGACCAAATGAGTGAAGATAAAATCCGCTCCCTGGAAGCTTCTATACAAGACAGCACTGCAGGGCAAAAGTTTACCATCCACCGAATCCCCAGGAGCCGAGAAGTGCGACAGTCCTGGAGTTCCTCTTTGCTAACAACTTTATATTCCCTGATCTACTCTGTGCCTCTAGTATTTAAACTGAGGCCAGATTTGGTGCTGTGCAATGGACCGGGGACATGTGTTCCTCTCTGTGTGTCGGCCCTGCTGCTAGGAATTCTGGGATTGAAGAAAGTGCTGATCGTCTACGTAGAAAGTATCTGCCGGGTGGAAACGCTGTCGCTGTCTGGGAGGATACTATACAACTTGGCAGACTACTTTTTTGTTCAGTGGTCAATTCTGAAAGAGAAATATCCTAAATCGATTTATATTGGCAGAAtagtgtaaataaacaaattgcttATCAGCCCTGACCtcaccattttattatttcagtggcAAAGTCCATTATTTCATCATACTTTTCCTAAGactttcagcaaaacaaaaccactttaTTAGTAGTCTAGTCATTCTGTGCTTGAGTTactcattgttttgttttttcagttttattaaggcatagtgatatataatataaacaaaccTATAAACGCACAAgcataaatgcaaattatatatatcacAACATAACCAAACCAAAAGTAGTTTGCCATCCTAAATGTGCGACAGTCCTGAAACTAGGCCTTTGAAATCCAGGGCTGATTTAAGTGTAATGCAACTGTGGTGAAAACAGAAATAGTGGTATCTCtgacttaaattaaaacaaaacaaaaatcggGAATTATTCATACTGTTTCTAACCTTTTGTTGTTGAGCAGAACTGTTCATTTTCCAGCTCCTATCTTTAACCACAGTCTTGACTGGTACTTAATGCTTTTAGTACATGTTCTGCTTAACGTAAAGTGACatctttaaaactaaatgtcaGATTTATTTTGGGAGAAGAAGGTTTTTAAGTTATGTGGTGTCCAATAAGTTACTTAGACCATAACCTTGTTGGCTCTTAAAGTTTTCAGGATGTGGATTTACTGGAGAAGCATTTCCATTGTTGATGCGTTTCCTGTCTGTGTACAGTAAGATCTCCTGGTAAAACGTGTCAGTGAAGAGGAAACGCATGACACAAGGGGGGGgatgtgttttgatttacagCGCcagcaaggggaaaaaaaaaaccaatgaACTGTGCTAAAAGCATTTACTATTTTTATCTCTTACCTTTTAACCCACACTATTTCTGGAATGGTTGATGAGATGTAACCTGAGACTTATGTTAATGTGATGCAGATCCTCTCttggttttgtgtgtggttgttttctttcattaactGATGTTTTCTCTACATTGTCTTAGGTCTGATTCACATTCATCCACAACCGAGGCAGTTGTTGGCATATTTCCATTGTTTACAGAGCTTTCTCTGCTTTATAgagaaaattagaaaacaaaacacattctcaGCTTTCTGTTCAAATGTTTGAGAagtcatgttttatattaattatttttcttcattattatgtGAAACATTACTTGCTAAGACTGTTGCACtttttctcctgtgtttttCAATTTCTGAATTTGCTTGCAGTGCTGTCAGTAATGCAGGACAGAGAAATTATACATCAAATTGCTTTCCCCATAATTGTGTGTGAAACTACATTGAAATACACTTAATTGAAAGGAAATGGGTGTTCCTGTTCCAAATGTAAGCCAAGTAGTTGTGTACAATGATACTGTGTGTTGATTTAAAAGTGGAAATATCCAAGTTCAGTTGTTGACGAAACTAGATTTGTGCATCGGACTTCCTTTAGGTTGTTGAAAGCTTTTTTGGACgataccttttttcttttataatacaAGAATTGCCCTGCACTCAGAAAATGCCAAGGTCACACACAATTCAACTTGAGAAAGTATAATACTGTCATGCAGAAATTAGACGGAAACTGTTGGTGTTTCAAATCAGAGATCTGCAGCCTCCGAGCCGTGTGTGAGTGTTAGTGTTGGCAGCTTGTCGAAGTCATTAAGTCAACTTGAGTGGGCTGGAAAGTTGCAGACCTTGGTATGGCAGtgctccaaggtgaaggtaaaGTGATACTGCTCAGGCTTCTGTCCACAGTATGTATCGATCTGAAATATAGCTTTGGTAAATTAAAagcctttgtttttaaatatgcttgTCTTATTCTTGATCCTCAGTGAAAAAAATGCTTCATATGTATTACCTTACccttttcattataataatctaaagattgtg

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016740 transferase activity molecular_function

KEGG:

id description
K07441 ALG14; beta-1,4-N-acetylglucosaminyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183118 lncRNA upstream 25161 15953615 ~ 15954678 (+) True G145577
TU182931 lncRNA upstream 722176 15255889 ~ 15257663 (+) True G145435
TU182914 lncRNA upstream 735593 15242385 ~ 15244246 (+) True G145418
TU182891 lncRNA upstream 827100 15142484 ~ 15152739 (+) True G145398
TU182866 lncRNA upstream 851268 15126586 ~ 15128571 (+) True G145379
TU183140 lncRNA downstream 45234 16036612 ~ 16047194 (+) True G145593
TU183182 lncRNA downstream 237910 16229288 ~ 16231853 (+) True G145630
TU183314 lncRNA downstream 922637 16914015 ~ 16914225 (+) True G145731
TU183329 lncRNA downstream 945449 16936827 ~ 16937075 (+) True G145744
TU183377 lncRNA downstream 1022099 17013477 ~ 17013714 (+) True G145782
AMCG00005116 mRNA upstream 224421 15753182 ~ 15755418 (+) True AMCG00005116
AMCG00005117 mRNA upstream 299111 15662094 ~ 15680728 (+) True AMCG00005117
AMCG00005118 mRNA upstream 317751 15642669 ~ 15662088 (+) True AMCG00005118
AMCG00005119 mRNA upstream 352580 15618611 ~ 15627259 (+) True AMCG00005119
AMCG00005110 mRNA upstream 487590 15465083 ~ 15492249 (+) True AMCG00005110
AMCG00005122 mRNA downstream 1988 15993366 ~ 16006829 (+) True AMCG00005122
AMCG00005121 mRNA downstream 46833 16038211 ~ 16043140 (+) True AMCG00005121
AMCG00005131 mRNA downstream 72574 16063952 ~ 16101489 (+) True AMCG00005131
AMCG00005132 mRNA downstream 115249 16106627 ~ 16158958 (+) True AMCG00005132
AMCG00005126 mRNA downstream 361502 16352880 ~ 16365652 (+) True AMCG00005126
TU183002 other upstream 595227 15384243 ~ 15384612 (+) False AMCG00005105
TU182286 other upstream 3198669 12780580 ~ 12781170 (+) True G144940
TU181952 other upstream 4316471 11662681 ~ 11663368 (+) True G144677
TU180912 other upstream 8248839 7729389 ~ 7731000 (+) False AMCG00004870
TU180621 other upstream 10555718 5423703 ~ 5424121 (+) True G143626
TU183561 other downstream 1773879 17765257 ~ 17771525 (+) True G145932
TU184056 other downstream 3588195 19579573 ~ 19579807 (+) True G146305
TU184341 other downstream 4190976 20182354 ~ 20184643 (+) True G146519
TU184347 other downstream 4282135 20273513 ~ 20279786 (+) False AMCG00005272
TU184405 other downstream 4530271 20521649 ~ 20524819 (+) True G146575

Expression Profile