RNA id: AMCG00005117


Basic Information

Item Value
RNA id AMCG00005117
length 870
RNA type mRNA
GC content 0.53
exon number 6
gene id AMCG00005117
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 15662094 ~ 15680728 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAGAAGGTTTTTACACATCTAAAGACTTCTTGCCACTGGTTGCCAAGGCCAGTAAACCAGGGATGTGTAGCTGTCACTCTGAGCTGCCAGTGTTGCATGGCACAGTAATCGTGCTGGGTGCCGGCGATACTGCCTTTGACTGCGCCACCTCTGCATTGCGCTGTGGAGCCCGACGTGTCTTTGTGGTCTTCAGGAAAGGATTTACAAACATAAGGGCTGTCCCAGAAGAGATGGAACTGGCAAGAGAAGAGAAATGTGAGTTCTTGCCATTCCTGTCTCCACGGGAGGTCATTGTGAAAGCTGGGCGAATAGTCAGCATGGAGTTTTGTCGCACCGAACAAAGCAAAGACGGCGACTGGATCGAGGATGAGGACCAAATCGTGCGCTTGAAGGCTGATTACATCATCAGTGCGTTTGGTTCAGTGCTGAGTGACCCCAAAGTGAGAGAGGCCATGACTCCCATCAAGTTTAACAGATGGGGTCTCCCCGAGCTGGATCCAGAGACCATGCAGACCAGTGAGCCATGGGTGTTCGCAGGCGGAGACATCGCCGGCCTGGCTAACACTACTGTAGAGTCGGTCAACGATGGAAAGCAGGCTTCCTGGTTcattcacaaatacatacagTCCAAGCATGGCTTTGCTGTAGACAGCCATCCCCAGCTTCCTCTCTTCTACTCACCCATTGACCTGGTTGACATCAGCGTCGAGATGGCTGGACTGAAGTTTCCAAATCCGTTTGGCCTGGCCAGCGCTCCGCCAACGACCAGTACCGCCATGATCCGCAGAGCGTTCCAGGAGGGCTGGGCGTTCGCTCTCACCAAGACCTTCTCTCTTGACAAGGGTGACTCACATAAAGAGATTTAA

Function

GO: NA

KEGG:

id description
K00207 DPYD; dihydropyrimidine dehydrogenase (NADP+)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182931 lncRNA upstream 404431 15255889 ~ 15257663 (+) True G145435
TU182914 lncRNA upstream 417848 15242385 ~ 15244246 (+) True G145418
TU182891 lncRNA upstream 509355 15142484 ~ 15152739 (+) True G145398
TU182866 lncRNA upstream 533523 15126586 ~ 15128571 (+) True G145379
TU182851 lncRNA upstream 565082 15094969 ~ 15097012 (+) True G145369
TU183118 lncRNA downstream 272887 15953615 ~ 15954678 (+) True G145577
TU183140 lncRNA downstream 355884 16036612 ~ 16047194 (+) True G145593
TU183182 lncRNA downstream 548560 16229288 ~ 16231853 (+) True G145630
TU183314 lncRNA downstream 1233287 16914015 ~ 16914225 (+) True G145731
TU183329 lncRNA downstream 1256099 16936827 ~ 16937075 (+) True G145744
AMCG00005118 mRNA upstream 6 15642669 ~ 15662088 (+) True AMCG00005118
AMCG00005119 mRNA upstream 34835 15618611 ~ 15627259 (+) True AMCG00005119
AMCG00005110 mRNA upstream 169845 15465083 ~ 15492249 (+) True AMCG00005110
AMCG00005105 mRNA upstream 277283 15379599 ~ 15384811 (+) True AMCG00005105
AMCG00005102 mRNA upstream 314716 15337268 ~ 15347378 (+) True AMCG00005102
AMCG00005116 mRNA downstream 72454 15753182 ~ 15755418 (+) True AMCG00005116
AMCG00005120 mRNA downstream 299111 15979839 ~ 15991378 (+) True AMCG00005120
AMCG00005122 mRNA downstream 312638 15993366 ~ 16006829 (+) True AMCG00005122
AMCG00005121 mRNA downstream 357483 16038211 ~ 16043140 (+) True AMCG00005121
AMCG00005131 mRNA downstream 383224 16063952 ~ 16101489 (+) True AMCG00005131
TU183002 other upstream 277482 15384243 ~ 15384612 (+) False AMCG00005105
TU182286 other upstream 2880924 12780580 ~ 12781170 (+) True G144940
TU181952 other upstream 3998726 11662681 ~ 11663368 (+) True G144677
TU180912 other upstream 7931094 7729389 ~ 7731000 (+) False AMCG00004870
TU180621 other upstream 10237973 5423703 ~ 5424121 (+) True G143626
TU183561 other downstream 2084529 17765257 ~ 17771525 (+) True G145932
TU184056 other downstream 3898845 19579573 ~ 19579807 (+) True G146305
TU184341 other downstream 4501626 20182354 ~ 20184643 (+) True G146519
TU184347 other downstream 4592785 20273513 ~ 20279786 (+) False AMCG00005272
TU184405 other downstream 4840921 20521649 ~ 20524819 (+) True G146575

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00045715 True 2288 mRNA 0.51 14 NC_007135.7 30521619 ~ 30774116 (+)